Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a13
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287...    36   0.021
04_04_0663 + 27058470-27059033,27059355-27059972                       33   0.25 
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645...    29   2.4  
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464...    29   2.4  

>01_01_0367 +
           2872650-2873045,2873800-2873940,2874255-2874364,
           2875279-2875390,2875959-2876030,2876605-2876696,
           2877116-2877236,2877712-2877834,2877935-2878130,
           2878221-2878408,2878553-2878624,2879336-2879434,
           2880027-2880107,2880337-2880405,2880730-2880787,
           2881181-2881347
          Length = 698

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 465 RTHTCGELRPKNVGERVVICGWVQYSRLS---KFLLLRDAYGLTQ 590
           R   CGEL   + G RV +CGWV   R      FL LRD  G  Q
Sbjct: 88  RDALCGELGAGDAGRRVRLCGWVALHRAHAGLTFLTLRDRSGTVQ 132


>04_04_0663 + 27058470-27059033,27059355-27059972
          Length = 393

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +3

Query: 216 RVKTEIATMLGHKINPNKIKNVCTLLRRVNTLKHLCNNNRTINSFIKRNE 365
           RV+ E A +LG K   NK  ++    +  NT K    N+RTI S I++N+
Sbjct: 344 RVQAEEAALLGKKQTKNKQVSLGEEQKAENTAKPWKKNSRTITSKIRKNK 393


>11_03_0212 -
           11761856-11762037,11762302-11762398,11763571-11764545,
           11766172-11766263,11766450-11766510
          Length = 468

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 303 NTLKHLCNNNRTINSFIKRNENVTSNIPFCRRAHNIKNKHKIDDGRLIIN 452
           N  K LC ++RT NSF ++++N  S   FC     + +K  +     +I+
Sbjct: 253 NPNKTLCYHSRTKNSFERKSQNQISAEAFCTNNEILVHKQDLFGSIFVIS 302


>02_05_0844 -
           32144417-32144764,32145588-32145686,32146218-32146410,
           32147049-32147107,32147189-32147263,32147557-32147670,
           32147776-32147895,32148204-32148216,32148421-32148512,
           32149078-32149164,32149254-32149328,32149630-32149680,
           32149852-32149947,32150135-32150221,32150312-32150368,
           32150475-32150600,32150709-32150949,32151028-32151114,
           32151260-32151637,32152847-32153187
          Length = 912

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +3

Query: 195 VSCKLTGRVKTEIATMLGHKINPNKIKNVCT----LLRRVNTLKHLCNNNRTINSFIKRN 362
           V CKLT  ++T +     H  N  ++ +  T    +L  +  LK LCN+ + I   IK N
Sbjct: 493 VCCKLTA-LQTALYNHFIHSKNVKRLISEGTKQSKVLAYITALKKLCNHPKLIYDTIKSN 551

Query: 363 ENVTSNIPFCRR 398
            +  S    C R
Sbjct: 552 NSGGSGFDDCLR 563


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,456,071
Number of Sequences: 37544
Number of extensions: 262312
Number of successful extensions: 527
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)