Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a13
         (642 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119180-1|AAM51040.1| 1082|Drosophila melanogaster SD02215p pro...    71   2e-12
AE014134-2794|AAF53577.3| 1082|Drosophila melanogaster CG31739-P...    71   2e-12
AF541947-2|AAN34648.1|  407|Drosophila melanogaster truncated po...    29   5.4  

>AY119180-1|AAM51040.1| 1082|Drosophila melanogaster SD02215p
           protein.
          Length = 1082

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 27/50 (54%), Positives = 38/50 (76%)
 Frame = +3

Query: 450 NGFTIRTHTCGELRPKNVGERVVICGWVQYSRLSKFLLLRDAYGLTQCIV 599
           N F  RTH CGEL   ++ E+VVICGW+++ R++KF +LRDAYG TQ ++
Sbjct: 400 NKFADRTHNCGELTSNDINEKVVICGWLEFQRMNKFFILRDAYGQTQVLL 449



 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 27/75 (36%), Positives = 43/75 (57%)
 Frame = +3

Query: 417 KHKIDDGRLIINGFTIRTHTCGELRPKNVGERVVICGWVQYSRLSKFLLLRDAYGLTQCI 596
           ++KI     I+  F  R  TC +LR  +VG+ V + GW+  ++ +KFL L+D YG TQ +
Sbjct: 218 EYKIAKNENILKYFENRDLTCNDLRRDDVGKTVTLVGWIPSTKNNKFLQLKDGYGQTQLM 277

Query: 597 VGSDDTDLSSLQLES 641
           +  +D  LS   L +
Sbjct: 278 I--EDQSLSDTFLST 290


>AE014134-2794|AAF53577.3| 1082|Drosophila melanogaster CG31739-PA
           protein.
          Length = 1082

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 27/50 (54%), Positives = 38/50 (76%)
 Frame = +3

Query: 450 NGFTIRTHTCGELRPKNVGERVVICGWVQYSRLSKFLLLRDAYGLTQCIV 599
           N F  RTH CGEL   ++ E+VVICGW+++ R++KF +LRDAYG TQ ++
Sbjct: 400 NKFADRTHNCGELTSNDINEKVVICGWLEFQRMNKFFILRDAYGQTQVLL 449



 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 27/75 (36%), Positives = 43/75 (57%)
 Frame = +3

Query: 417 KHKIDDGRLIINGFTIRTHTCGELRPKNVGERVVICGWVQYSRLSKFLLLRDAYGLTQCI 596
           ++KI     I+  F  R  TC +LR  +VG+ V + GW+  ++ +KFL L+D YG TQ +
Sbjct: 218 EYKIAKNENILKYFENRDLTCNDLRRDDVGKTVTLVGWIPSTKNNKFLQLKDGYGQTQLM 277

Query: 597 VGSDDTDLSSLQLES 641
           +  +D  LS   L +
Sbjct: 278 I--EDQSLSDTFLST 290


>AF541947-2|AAN34648.1|  407|Drosophila melanogaster truncated pol
           protein protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 18/72 (25%), Positives = 31/72 (43%)
 Frame = +3

Query: 210 TGRVKTEIATMLGHKINPNKIKNVCTLLRRVNTLKHLCNNNRTINSFIKRNENVTSNIPF 389
           T R   +   +L   +N  + + +  L +    L H  NN  T ++ IK +   T NIP 
Sbjct: 126 TERQDDQQLNILTEHLNSEEKQYILKLCKSFKRLFHNENNQLTFSNAIKHSIPTTDNIPI 185

Query: 390 CRRAHNIKNKHK 425
             +++     HK
Sbjct: 186 HTKSYRYPFVHK 197


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,362,648
Number of Sequences: 53049
Number of extensions: 486534
Number of successful extensions: 1287
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)