Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a13
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   1.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.7  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +3

Query: 276 NVCTLLRRVNTLKHLCNNNRTINSFIKRNENVTSNIPFCRRAHNIKNKHKIDD 434
           NV  L+R  NT  H  NNN+  N     N+N  +     + A+N KN ++ D+
Sbjct: 404 NVKELIR--NT--HCVNNNQNDNIQNTNNQNDNNQKNNKKNANNQKNNNQNDN 452


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 492 PKNVGERVVICGWVQYSRLSKFLLLRD 572
           P + GE+V +C  +  S    FLLL +
Sbjct: 274 PSDSGEKVSLCSSILLSLTVFFLLLAE 300


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -2

Query: 521 YDDSFTDILRSQFSACMSSNRESINY*SSIVNFMFIFNIMCASAKRYIRGYIFIS 357
           Y+D F +   S+ S C     E  NY    V+ +F  +        +I G I ++
Sbjct: 262 YEDEFDEFGDSKCSLCQRRFEEQGNYSCLKVDLIFTRDRAFYFTTVFIPGIILVT 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,070
Number of Sequences: 438
Number of extensions: 3179
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)