Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a08
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr 1|||...    54   2e-08
SPAC31A2.13c |sft1||SNARE Sft1|Schizosaccharomyces pombe|chr 1||...    32   0.071
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    29   0.66 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   4.7  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    26   6.1  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    25   8.1  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    25   8.1  

>SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 22/65 (33%), Positives = 39/65 (60%)
 Frame = +2

Query: 341 DTIENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVDRSSGFLGKTMGRV 520
           D++ENEN+    +L+GK+ SLK +++ +G E+    KL+  ++D  D +   L  TM R+
Sbjct: 28  DSLENENDERISKLTGKVKSLKELTMNIGTEITSSTKLMESMNDSFDSTKSLLSGTMTRL 87

Query: 521 LRLGK 535
             + K
Sbjct: 88  KNVSK 92


>SPAC31A2.13c |sft1||SNARE Sft1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 91

 Score = 32.3 bits (70), Expect = 0.071
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +2

Query: 347 IENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLD 469
           + ++NER  E LSG++SSLK ++ ++ +   D  ++ R  +
Sbjct: 1   MNDQNERRLETLSGQVSSLKNVTYDIYSRANDYTRIDRATE 41


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +2

Query: 341 DTIENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVDRSSGFLGKTMGRV 520
           DT++ E ER++E L       ++I     N + D+E  +  L + +  ++  L +   RV
Sbjct: 365 DTVKREKERLSEHLKSLQEQYEHIQSVYKNVLLDRESYIMRLGNKISENNELLNE--NRV 422

Query: 521 LR 526
           L+
Sbjct: 423 LK 424


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/36 (25%), Positives = 23/36 (63%)
 Frame = +3

Query: 117 HILLQIDKNKQYFIVNRRQVDPKLNKRLTKDVINQD 224
           H+L+Q+ K   + ++ R+  D +  K++ KD++ ++
Sbjct: 843 HVLMQLRKAANHALLFRKFYDDEKLKQMAKDIMQEE 878


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = +2

Query: 245 CVLLLIKTAGRTNMRRAREGYHYQPVPRVATEDTIENEN----ERMAEELSGKISSLKYI 412
           C  LL +   +T      E   Y       +  T+  EN    +   +EL  +I+  +  
Sbjct: 146 CAELLTEEMSKTLRALKEEKKMYFNYDNFLSSQTVHEENTAALDSEIDELMKQINEKEEK 205

Query: 413 SIELGNEVRDQEKLLRGLDDDVDR 484
             E+ +E    +KLLR LD++ ++
Sbjct: 206 IEEISDETDKLQKLLRELDEEKEK 229


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 537 PLPSLKTLPMVFPRKPELLSTSSSN-PRKSFSWSLTSLPNSMEMYL 403
           P P    LP+  P   ++L+ +S   P+ SFSW+L   P    ++L
Sbjct: 28  PYPPAPQLPI--PAVVDILTKASQALPQISFSWTLIDQPPDGSLFL 71


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/49 (20%), Positives = 24/49 (48%)
 Frame = +3

Query: 33  NYIKANYILTVNHVCFQCVQIIKLVFFFHILLQIDKNKQYFIVNRRQVD 179
           ++++  ++     + FQC Q +K  + F   L  +   + F  N+R ++
Sbjct: 397 SWVEVQFLKNAVDILFQCRQTLKWTYAFAYYLARNNQTEIFEDNQRDLE 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,019
Number of Sequences: 5004
Number of extensions: 57974
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)