Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a08
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1607 - 28201729-28201818,28201913-28201972,28202040-282020...    40   0.002
02_04_0072 + 19463801-19464166,19464608-19464701,19464805-194649...    32   0.52 
12_02_0432 + 19008499-19008978,19010830-19011411                       29   3.7  
08_02_1053 - 23968372-23968442,23969245-23969294,23970396-239704...    29   4.8  
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776     28   6.4  
06_01_1112 - 9157776-9158149,9158248-9161158                           28   8.5  

>08_02_1607 -
           28201729-28201818,28201913-28201972,28202040-28202096,
           28203526-28203670,28204318-28204331
          Length = 121

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/56 (30%), Positives = 35/56 (62%)
 Frame = +2

Query: 350 ENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVDRSSGFLGKTMGR 517
           E+EN++  + L  ++S LK ++ ++  EV +  ++L  + +D+D S GFL  T+ +
Sbjct: 34  EHENDQAMDSLHDRVSVLKRLTGDIHEEVENHNRMLDRMGNDMDASRGFLSGTVDK 89


>02_04_0072 +
           19463801-19464166,19464608-19464701,19464805-19464926,
           19465033-19465130,19465461-19465560
          Length = 259

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +2

Query: 323 PRVATEDT-IENENERMA-EELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVD 481
           P  A E   +E + +  A ++LSG +  LK ++ ++G+E+  Q K L  L  DVD
Sbjct: 186 PTTAMEKVQVEKQKQDDALDDLSGVLGQLKGMACDMGSELDRQNKALDDLQGDVD 240


>12_02_0432 + 19008499-19008978,19010830-19011411
          Length = 353

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/41 (26%), Positives = 26/41 (63%)
 Frame = +2

Query: 356 ENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDV 478
           +N++  E+L+G++S +  I  ++       +KLL GL++++
Sbjct: 37  QNKKECEQLAGRVSMIDEILSQMQESDETMQKLLTGLENEL 77


>08_02_1053 -
           23968372-23968442,23969245-23969294,23970396-23970457,
           23970527-23970709,23970737-23970901,23972235-23972408
          Length = 234

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +2

Query: 8   RRRLSHLTQLHKSKLYTYC---KPCMFSMCPDY 97
           R+ +SH     K+ L+TYC   +  +FS CP++
Sbjct: 173 RKNVSHKISYAKASLFTYCASPRNMLFSECPNH 205


>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
          Length = 429

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 531 PSLKTLPMVFPRK--PELLSTSSSNPRKSFSWSLT 433
           P L + P   P    P L  +S+ +PR+ F+W LT
Sbjct: 366 PPLSSAPKQHPESEAPPLAPSSAPSPREEFAWPLT 400


>06_01_1112 - 9157776-9158149,9158248-9161158
          Length = 1094

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 180 PKLNKRLTKDVINQDLIIIITLVSCC 257
           PK N+ + K ++   +II++  V+CC
Sbjct: 736 PKRNRHILKYILLPGIIIVVAAVTCC 761


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,361,977
Number of Sequences: 37544
Number of extensions: 334885
Number of successful extensions: 871
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)