Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a08
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY518688-1|AAR99814.1|  107|Caenorhabditis elegans BET1 protein.       54   1e-07
AC024838-2|AAU87809.1|  107|Caenorhabditis elegans Hypothetical ...    54   1e-07
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy...    29   3.3  
AF024497-4|AAO21479.1|  807|Caenorhabditis elegans Defective in ...    29   3.3  
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ...    29   3.3  
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ...    29   3.3  
U40802-5|AAK19011.2|  339|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>AY518688-1|AAR99814.1|  107|Caenorhabditis elegans BET1 protein.
          Length = 107

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 23/58 (39%), Positives = 39/58 (67%)
 Frame = +2

Query: 347 IENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVDRSSGFLGKTMGRV 520
           +E  N+ +   LS K+++LK ++I +G++VR+Q +LL  +D+D D S G L  TM R+
Sbjct: 18  LERHNDDLVGGLSSKVAALKRVTIAIGDDVREQNRLLNDMDNDFDSSKGLLQSTMRRL 75


>AC024838-2|AAU87809.1|  107|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.7 protein.
          Length = 107

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 23/58 (39%), Positives = 39/58 (67%)
 Frame = +2

Query: 347 IENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVDRSSGFLGKTMGRV 520
           +E  N+ +   LS K+++LK ++I +G++VR+Q +LL  +D+D D S G L  TM R+
Sbjct: 18  LERHNDDLVGGLSSKVAALKRVTIAIGDDVREQNRLLNDMDNDFDSSKGLLQSTMRRL 75


>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
           cytoplasmic polyA polymeraseprotein.
          Length = 1113

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +2

Query: 296 REGYHYQPVPRVATEDTIENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDD 475
           R   H    PR+ TE+   NE  R A   +   SS+  +S        D+  L + L  D
Sbjct: 462 RRRIHKSQEPRIGTEEKALNELPRKANRRNSSCSSISSVSESSSPSALDESTLTKILPTD 521


>AF024497-4|AAO21479.1|  807|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform d protein.
          Length = 807

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +2

Query: 296 REGYHYQPVPRVATEDTIENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDD 475
           R   H    PR+ TE+   NE  R A   +   SS+  +S        D+  L + L  D
Sbjct: 156 RRRIHKSQEPRIGTEEKALNELPRKANRRNSSCSSISSVSESSSPSALDESTLTKILPTD 215


>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform c protein.
          Length = 1036

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +2

Query: 296 REGYHYQPVPRVATEDTIENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDD 475
           R   H    PR+ TE+   NE  R A   +   SS+  +S        D+  L + L  D
Sbjct: 385 RRRIHKSQEPRIGTEEKALNELPRKANRRNSSCSSISSVSESSSPSALDESTLTKILPTD 444


>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform a protein.
          Length = 1113

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +2

Query: 296 REGYHYQPVPRVATEDTIENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDD 475
           R   H    PR+ TE+   NE  R A   +   SS+  +S        D+  L + L  D
Sbjct: 462 RRRIHKSQEPRIGTEEKALNELPRKANRRNSSCSSISSVSESSSPSALDESTLTKILPTD 521


>U40802-5|AAK19011.2|  339|Caenorhabditis elegans Hypothetical
           protein ZC477.5 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +3

Query: 237 ITLVSCC*SKRRAERI*GEPAKATTISQCPE*LRKILSKMKMNEWLKNSVAR 392
           ITL   C S R  ER+  E  +   +  CPE   +  S +K+   + NSVAR
Sbjct: 21  ITLEKFC-SNRLTERLKCERMRNQYLQACPEGKDQFSSVIKLYSVIPNSVAR 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,789,545
Number of Sequences: 27780
Number of extensions: 320499
Number of successful extensions: 907
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)