Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a08
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   5.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.8  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 630 NENHLNFKIIYNKKNTKMEKRN 565
           N N+ N+K  YN  N K+  +N
Sbjct: 323 NYNNNNYKYNYNNYNKKLYYKN 344


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -1

Query: 693 TFQHIQNLFRNTYNTQE*WMGNENHLNFKIIY 598
           T  +  N   N YN       N N+ N+K +Y
Sbjct: 322 TIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLY 353


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 553 YFLSIPLLHFCVLFVVYYFKI*MIFIT 633
           YF   P +HF  LF     K+   F T
Sbjct: 454 YFFICPSIHFAQLFADRGMKVYYYFFT 480


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 553 YFLSIPLLHFCVLFVVYYFKI*MIFIT 633
           YF   P +HF  LF     K+   F T
Sbjct: 454 YFFICPSIHFAQLFADRGMKVYYYFFT 480


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 18  YHI*HNYIKANYILTVNHVCF 80
           YH+ H YI +  I+ ++ + F
Sbjct: 215 YHLFHTYIPSALIVVMSWIAF 235


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 51  YILTVNHVCFQCVQIIKLVFFFHI 122
           Y   V  VCF C  ++  + + HI
Sbjct: 407 YSRIVFPVCFVCFNLMYWIIYLHI 430


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 51  YILTVNHVCFQCVQIIKLVFFFHI 122
           Y   V  VCF C  ++  + + HI
Sbjct: 407 YSRIVFPVCFVCFNLMYWIIYLHI 430


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 30  HNYIKANYILTVNHVCFQCVQIIKLVFFFHILLQIDKN 143
           +N  K  +  T+N + F    + K V + H ++++D N
Sbjct: 42  NNKSKKYFEQTLNELNFNLNYVNKGVTYKHTIIEMDSN 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,015
Number of Sequences: 438
Number of extensions: 4397
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)