Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a06
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   3.4  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    27   3.4  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    26   5.9  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    26   5.9  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   7.8  

>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 640 DLLLEVMTFDGYFDPGLTLIVL 575
           D++  V  FDGY  PG +L+VL
Sbjct: 87  DIIPLVKGFDGYLQPGSSLLVL 108


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 233 SRRNKGTSTNMIKLFSRFSSELIGHFSRSNHLYKF 129
           S  +K  STNM K FS+   +  G F  S H  +F
Sbjct: 567 SEWSKNNSTNMPKEFSQLLDKAFGAFFDSKHPSRF 601


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 344 MGSDP*RKSWDYSISNCHGI*ANHEREPLPLCAKAIGSR 228
           +G D   K WD SI +C     +H+ E   +C      R
Sbjct: 191 VGKDSFMKLWDLSIQHCVETHVDHQGEIWAMCVSPDAKR 229


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 389 SNYIPKSIANKKLKIHSSATKEDIEKAINQCKELILN 499
           S Y+ K +  K+L I  S   + I+      KELILN
Sbjct: 322 SVYLAKVVGGKQLGIFDSVAIKSIDLQCQTRKELILN 358


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/84 (21%), Positives = 34/84 (40%)
 Frame = +2

Query: 413 ANKKLKIHSSATKEDIEKAINQCKELILNSSQCSDERKWXXXXXXXXXXXXXXXKDNEGQ 592
           ANK L+IH++   ED  K I + K     + Q + +++                  + G+
Sbjct: 31  ANKSLRIHATTEGEDFVKQIEKQKLTGSPNPQATPKQENKSNFFSEKQSVRENGNSSAGE 90

Query: 593 TRVKVSIKGHHFEQQVNPNNRKQY 664
            + K + + H   Q++      QY
Sbjct: 91  KKQKWTSEQHLLVQKIIKYKNHQY 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,698
Number of Sequences: 5004
Number of extensions: 49366
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)