Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a06
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.     29   3.2  
U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical p...    28   5.5  

>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 602 KVSIKGHHFEQQVNPNNRKQYCDHCSGVIW 691
           ++ +KGH F   +N  N   YC  C   IW
Sbjct: 479 RIQVKGHSFS--INSVNTVHYCYQCRDAIW 506


>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 602 KVSIKGHHFEQQVNPNNRKQYCDHCSGVIW 691
           ++ +KGH F   +N  N   YC  C   IW
Sbjct: 479 RIQVKGHSFS--INSVNTVHYCYQCRDAIW 506


>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
          Length = 1293

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 602 KVSIKGHHFEQQVNPNNRKQYCDHCSGVIW 691
           ++ +KGH F   +N  N   YC  C   IW
Sbjct: 432 RIQVKGHSFS--INSVNTVHYCYQCRDAIW 459


>U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical
           protein C25B8.7 protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 63  QNKGNVNTETSRERSTN-ISDHVKFVQVIRTREMADQFRRK-P*KKFNHIC*CSFVTAGT 236
           Q++ +  T  S   STN +S  V +V +   ++   +  RK P  KF  IC C       
Sbjct: 349 QDQNSYETNKSNITSTNSVSSKVFYVDLTMAKQNHTKTLRKAPLAKFPSICSCGSFVTNE 408

Query: 237 DCFCTQW 257
           +  CT++
Sbjct: 409 NLQCTRF 415


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,731,113
Number of Sequences: 27780
Number of extensions: 282831
Number of successful extensions: 788
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)