Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25a05
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81127-2|CAB03387.1| 137|Caenorhabditis elegans Hypothetical pr... 56 3e-08
AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding... 54 1e-07
AC024771-9|ABA61863.1| 137|Caenorhabditis elegans Lipid binding... 53 2e-07
AC024771-8|AAK70656.1| 152|Caenorhabditis elegans Lipid binding... 53 2e-07
AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding... 53 2e-07
Z81127-7|CAB03391.2| 137|Caenorhabditis elegans Hypothetical pr... 51 7e-07
Z82060-2|CAB04882.1| 421|Caenorhabditis elegans Hypothetical pr... 30 1.5
U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical pr... 29 4.4
U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical pr... 29 4.4
U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81530-8|CAB04305.2| 329|Caenorhabditis elegans Hypothetical pr... 28 7.8
>Z81127-2|CAB03387.1| 137|Caenorhabditis elegans Hypothetical
protein T22G5.2 protein.
Length = 137
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +2
Query: 359 MPSIAGKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTV 538
M G+++ + E+ D+Y +GV + RK + P++EI +DG+T S +
Sbjct: 4 MNDFIGRWKLVQTENFDEYMKEIGVGLITRKAAAHLKPILEIRLDGETWNFDQFSTFKNT 63
Query: 539 EHKFKLGEEYEEKMPN 586
+ FKLGEE+ E P+
Sbjct: 64 KLSFKLGEEFVENSPD 79
>AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding
protein protein 6 protein.
Length = 135
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +2
Query: 374 GKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHKFK 553
G+++ +E+ ++Y VGV + RK + P +EI ++GD S + FK
Sbjct: 7 GRWKLIHSENFEEYMKEVGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFKNTTLSFK 66
Query: 554 LGEEYEEKMPNS-IIKSVTTITNDSEMETKSVIPDT 658
LG+E++E P+ +KSV N + + I D+
Sbjct: 67 LGQEFDETTPDGRTVKSVVNFENGKFIHIQKKIKDS 102
>AC024771-9|ABA61863.1| 137|Caenorhabditis elegans Lipid binding
protein protein 9,isoform b protein.
Length = 137
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +2
Query: 368 IAGKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHK 547
+ GK+ +E+ D+Y VGV + R + + + P +E +++GD T+ ++S + K
Sbjct: 7 LVGKWNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFKNYTLK 66
Query: 548 FKLGEEYEEKMPNS-IIKSVTTITND 622
+KLG +EK + + SV +I ND
Sbjct: 67 WKLGTASDEKTADGRDVSSVFSIEND 92
>AC024771-8|AAK70656.1| 152|Caenorhabditis elegans Lipid binding
protein protein 9,isoform a protein.
Length = 152
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +2
Query: 368 IAGKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHK 547
+ GK+ +E+ D+Y VGV + R + + + P +E +++GD T+ ++S + K
Sbjct: 22 LVGKWNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFKNYTLK 81
Query: 548 FKLGEEYEEKMPNS-IIKSVTTITND 622
+KLG +EK + + SV +I ND
Sbjct: 82 WKLGTASDEKTADGRDVSSVFSIEND 107
>AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding
protein protein 5 protein.
Length = 136
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = +2
Query: 374 GKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHKFK 553
G+++ ++E+ +DY VGV + RK + P +EI ++G+ + S + +F
Sbjct: 8 GRWKLVESENFEDYLKEVGVGLLLRKAACAAKPTLEIKVNGNKWHVNQLSTFKNTTLEFT 67
Query: 554 LGEEYEEKMPNS-IIKSVTTITNDSEMETKSVIPDTGAKCGRHYQFTDEECIVTL 715
LG E++E P+ KS TI + + + I D+ F E+ I TL
Sbjct: 68 LGVEFDETTPDGRQFKSTITIEDGKVVHVQKRIKDSDHDSVITRWFEGEKLITTL 122
>Z81127-7|CAB03391.2| 137|Caenorhabditis elegans Hypothetical
protein T22G5.6 protein.
Length = 137
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/76 (30%), Positives = 42/76 (55%)
Frame = +2
Query: 359 MPSIAGKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTV 538
M G+++ +E+ ++Y +GV + RK S++SP +EI +DGDT S +
Sbjct: 4 MKEFIGRWKLVHSENFEEYLKEIGVGLLIRKAASLTSPTLEIKLDGDTWHFNQYSTFKNN 63
Query: 539 EHKFKLGEEYEEKMPN 586
+ FK+ E++ E P+
Sbjct: 64 KLAFKIREKFVEIAPD 79
>Z82060-2|CAB04882.1| 421|Caenorhabditis elegans Hypothetical
protein T27F6.2 protein.
Length = 421
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 718 CESHNTFFISKLIVTSTFSSCVRYNRFCLHFTIIGDCCDTFYNGIG 581
CES + +I +L +T T + YN +C F+ + +TF + G
Sbjct: 143 CESQHVAYICELPITYTDNCDFNYNGYCYTFSSTTNSINTFISAQG 188
>U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical
protein F08F8.9c protein.
Length = 517
Score = 28.7 bits (61), Expect = 4.4
Identities = 27/92 (29%), Positives = 38/92 (41%)
Frame = +2
Query: 425 VGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSV 604
+GVP RK+ S P DG NS+ TV + + EE +EK P +
Sbjct: 13 IGVPLEARKLPSARIPKKPKETDG------NST--ETVVNSTEKPEERKEKPPKPPKQKQ 64
Query: 605 TTITNDSEMETKSVIPDTGAKCGRHYQFTDEE 700
N + K++I DTG + F EE
Sbjct: 65 KQKQNLNNKFLKNLITDTGKPASMNGLFVAEE 96
>U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical
protein F08F8.9a protein.
Length = 626
Score = 28.7 bits (61), Expect = 4.4
Identities = 27/92 (29%), Positives = 38/92 (41%)
Frame = +2
Query: 425 VGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSV 604
+GVP RK+ S P DG NS+ TV + + EE +EK P +
Sbjct: 13 IGVPLEARKLPSARIPKKPKETDG------NST--ETVVNSTEKPEERKEKPPKPPKQKQ 64
Query: 605 TTITNDSEMETKSVIPDTGAKCGRHYQFTDEE 700
N + K++I DTG + F EE
Sbjct: 65 KQKQNLNNKFLKNLITDTGKPASMNGLFVAEE 96
>U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical
protein F08F8.9b protein.
Length = 624
Score = 28.7 bits (61), Expect = 4.4
Identities = 27/92 (29%), Positives = 38/92 (41%)
Frame = +2
Query: 425 VGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSV 604
+GVP RK+ S P DG NS+ TV + + EE +EK P +
Sbjct: 13 IGVPLEARKLPSARIPKKPKETDG------NST--ETVVNSTEKPEERKEKPPKPPKQKQ 64
Query: 605 TTITNDSEMETKSVIPDTGAKCGRHYQFTDEE 700
N + K++I DTG + F EE
Sbjct: 65 KQKQNLNNKFLKNLITDTGKPASMNGLFVAEE 96
>Z81530-8|CAB04305.2| 329|Caenorhabditis elegans Hypothetical
protein F36D1.3 protein.
Length = 329
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -2
Query: 658 CVRYNRFCLHFTIIGDCCDTFY--NGIGH 578
C R+ +F L T+I CC TF+ +GH
Sbjct: 145 CRRFMKFSLPITVILPCCFTFFMVPAVGH 173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,191,149
Number of Sequences: 27780
Number of extensions: 307550
Number of successful extensions: 665
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -