Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25a04
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0854 - 32477994-32478161,32478689-32478826,32479225-324794... 35 0.077
01_06_0853 - 32468690-32468857,32469398-32469535,32469930-324701... 35 0.077
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 31 0.71
11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142 31 0.94
05_07_0064 + 27440520-27440942,27442387-27442998,27443109-274431... 30 1.6
09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304... 29 2.9
01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764... 29 3.8
04_01_0041 - 464695-464850,467485-469029 29 5.0
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 28 6.6
08_01_0639 + 5544411-5544413,5545000-5545343,5546420-5546849 28 8.8
>01_06_0854 -
32477994-32478161,32478689-32478826,32479225-32479440,
32479580-32479656,32481144-32481555,32482248-32482850,
32482954-32483229
Length = 629
Score = 34.7 bits (76), Expect = 0.077
Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Frame = +3
Query: 375 FPRLRHLLVSC--WGNYAWDVNVRFRFENHFIVANAVYRGRPVT-ESNIQEYISDIVSKY 545
+PR R + V+ GN W V ++H I + +++Y++ + +K
Sbjct: 85 YPRFRSIQVTDEDGGNPRW-VRTTLNVDDHIIYPELDMDAVAADPDKAVEDYVASLSTKP 143
Query: 546 FSPDQPPWQYIIIPCAATEPKYYILVRVHHLLLSGAKSINI 668
+P W++ ++ +E +RVHH L G + +
Sbjct: 144 MDESRPLWEFHVLDFPTSEAAATTAIRVHHSLGDGMSLLTL 184
>01_06_0853 -
32468690-32468857,32469398-32469535,32469930-32470145,
32470280-32470356,32470483-32470549,32471264-32471866,
32471971-32472258
Length = 518
Score = 34.7 bits (76), Expect = 0.077
Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Frame = +3
Query: 375 FPRLRHLLVSC--WGNYAWDVNVRFRFENHFIVANAVYRGRPVT-ESNIQEYISDIVSKY 545
+PR R + V+ GN W V ++H I + +++Y++ + +K
Sbjct: 89 YPRFRSIQVTDEDGGNPRW-VRTTVNLDDHIIYPELDMDAVAADPDKAVEDYVASLSTKP 147
Query: 546 FSPDQPPWQYIIIPCAATEPKYYILVRVHHLLLSGAKSINI 668
+P W++ ++ +E +RVHH L G + +
Sbjct: 148 MDESRPLWEFHVLDFPTSEAAATTAIRVHHSLGDGMSLLTL 188
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 31.5 bits (68), Expect = 0.71
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 570 QYIIIPCAATEPKYYILVRVHHLLLSGAKSINIGD 674
+Y++I C +T+PKY +HH L SI + D
Sbjct: 5111 KYLLILCYSTKPKYQPKASIHHKGLKEDSSIEVDD 5145
>11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142
Length = 751
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 267 SPDSDYFRCVSSNVLTVSVLMNSKSGYL--LDSSLSHKCLLTRTTV 136
SP D+ RC+S + V S SG++ L SS+ + +T TV
Sbjct: 35 SPIDDFLRCLSGKIPAEQVFTQSSSGFMAELTSSVQNPRFVTNATV 80
>05_07_0064 +
27440520-27440942,27442387-27442998,27443109-27443175,
27443271-27443362,27443493-27443708,27443869-27444006,
27444325-27444474
Length = 565
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/53 (22%), Positives = 28/53 (52%)
Frame = +3
Query: 510 IQEYISDIVSKYFSPDQPPWQYIIIPCAATEPKYYILVRVHHLLLSGAKSINI 668
I++Y+S + ++ +P W+ ++ +E + VR+HH L G +++
Sbjct: 183 IEDYMSTLSTQPMDHSRPLWELHVLDFPTSEAAATVAVRMHHSLGDGISLLSL 235
>09_04_0609 -
18929600-18929646,18929753-18929924,18930304-18930498,
18930691-18930801,18930885-18931097,18931643-18931720,
18931894-18932001,18932175-18932316,18932413-18933761,
18934492-18935121
Length = 1014
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -2
Query: 238 VQQCSDCVSFDEFEIWISTGQQSKP*MSAHTYNCK 134
+Q+C +C+ + +S+ Q +S HTY C+
Sbjct: 803 IQKCIECIPLEHIGFLVSSFQCQVAKLSMHTYGCR 837
>01_06_1320 +
36272716-36273339,36274222-36275762,36276349-36276490,
36276622-36276729,36276814-36277026,36277113-36277223,
36278056-36278250,36278874-36279048,36279189-36279226
Length = 1048
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 238 VQQCSDCVSFDEFEIWISTGQQSKP*MSAHTYNCK 134
+Q+C +CV D + IST +S H Y C+
Sbjct: 839 IQKCIECVPEDSIQFIISTFYGQVVPLSTHPYGCR 873
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 362 IPISLVNNVLYEFFFDFIDVRITFHGQ*YVNDPLIPIISDACPAMF 225
+ + VN L F F DV +T Y+ +PI+S C A +
Sbjct: 31 VEFTKVNTKLISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYY 76
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = -3
Query: 267 SPDSDYFRCVSSNVLT----VSVLMNSKSGYLLDSSLSHKCLLTRT 142
SP + + +S N+L+ +SVL+N G LLD S L+TR+
Sbjct: 3402 SPHAQKSKVLSQNILSDDKFISVLLNISRGNLLDKIQSSVSLVTRS 3447
>08_01_0639 + 5544411-5544413,5545000-5545343,5546420-5546849
Length = 258
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -1
Query: 374 HE-LSIPISLVNNVLYEFFFDFIDVRI-TFHGQ*YVNDPLIPIISDACPAMF*LC 216
HE LS+ +V + + D D R+ F GQ +VND L+ I D P + LC
Sbjct: 70 HEALSLKEPIVMSEMARAAVDRSDGRLEAFEGQWFVNDGLLNYIRDRSPKLKRLC 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,301,322
Number of Sequences: 37544
Number of extensions: 353653
Number of successful extensions: 753
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -