Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a04
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    27   0.14 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.9  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 321 EKLIEHVIDKRDRNGQFMFPRLRHLLVSCWGN 416
           E+  + V +  DRNG   F  L  L + CW +
Sbjct: 304 ERSSQSVAEVMDRNGVLFFGLLSDLAIGCWNS 335


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 312 EIKEKLIE-HVIDKRDRNGQFMFPRLRHLLVSCWG 413
           + K+ LI  H   +  RNG   +   RHL++SC G
Sbjct: 154 DFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQG 188


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 312 EIKEKLIE-HVIDKRDRNGQFMFPRLRHLLVSCWG 413
           + K+ LI  H   +  RNG   +   RHL++SC G
Sbjct: 154 DFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQG 188


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 312 EIKEKLIE-HVIDKRDRNGQFMFPRLRHLLVSCWG 413
           + K+ LI  H   +  RNG   +   RHL++SC G
Sbjct: 205 DFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQG 239


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 312 EIKEKLIE-HVIDKRDRNGQFMFPRLRHLLVSCWG 413
           + K+ LI  H   +  RNG   +   RHL++SC G
Sbjct: 154 DFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQG 188


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 453 NHFIVANAVYRGRPVTESNIQEYISDIVSK 542
           N F+     Y G P   S + E +SD+  +
Sbjct: 415 NRFLGGIGGYNGLPTVMSGLDESLSDVTPR 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,479
Number of Sequences: 438
Number of extensions: 4421
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)