Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a03
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    27   2.2  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    27   2.2  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    27   2.2  
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch...    27   2.9  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   2.9  
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    27   3.9  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    26   5.1  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    26   6.8  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    26   6.8  

>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 677 SMPSAKIASSIESLYWLNNRFILVSDIFSLDP 582
           S+PS   +   E ++WL N   L S +FSL P
Sbjct: 249 SVPSTLFSRDCEQIFWLEN---LASAVFSLHP 277


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 488 SHELCSPKEFNTFKLFMFVFKLFS 417
           SHE+ SP +FN  K    VF+L +
Sbjct: 404 SHEVLSPAQFNALKTLKTVFELIN 427


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 628 NQYKDSIEDAILAEGIENLCNDLNLSPDDFKVL 726
           N+  D IE  ILA GI+ L +   L  +D KV+
Sbjct: 21  NEGLDGIEQEILAAGIDELNSRTRLLENDIKVM 53


>SPCC1259.06 |||transcription factor TFIID complex subunit 8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 222

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 544 PKLPSIPRTMSSLGSSE-KISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLSPDDFK 720
           P  P+ P+ +  L + E +++E  +  + N  +    D+      E  C++LNL    F 
Sbjct: 150 PVRPTSPKQIRELATQESRLAEHALRKILNVNQPRSADSPRHASFEKACSELNLDVSSFH 209

Query: 721 VL 726
           ++
Sbjct: 210 LV 211


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +1

Query: 466 FGEQSSCDPLNVQKNLVCEKTPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQY 636
           F +++ C PL   +N   E         LP IP+ +  L  +  I++T+ N    +Y
Sbjct: 329 FSKRAVCKPLTRNENTFYETIEACHPELLPFIPKYIGVLNVTHTITKTEENDSTTEY 385


>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +2

Query: 32  KSTQFGIGGFW 64
           KS++FGIGGFW
Sbjct: 241 KSSKFGIGGFW 251


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 193 VRSS*VEVLDVEHFLCIQNYITTVYPM 273
           V +S V V +  +++CI NY+T  YP+
Sbjct: 419 VGNSMVTVANGHNWMCILNYLTDSYPL 445


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 309 ISLRFETAETVAHWINCCNIILNT*KMFHIQNFDLRA--SHSFYT 181
           +S+  +T ET A   + CN+++   + F   NF+ R   +H  Y+
Sbjct: 78  VSIGSKTTETPASVQDICNVVVYLKERFKDTNFEARGFIAHDLYS 122


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 234 FMYSKLYYNSLSNGPLSQLF 293
           F+  KLYY SLS  P ++L+
Sbjct: 14  FLEDKLYYTSLSQPPKAELY 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,863,624
Number of Sequences: 5004
Number of extensions: 58110
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)