Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25a03
(764 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL024499-2|CAB54260.2| 242|Caenorhabditis elegans Hypothetical ... 45 5e-05
AL132948-33|CAD57708.2| 734|Caenorhabditis elegans Hypothetical... 31 0.90
AL132948-32|CAD31833.3| 731|Caenorhabditis elegans Hypothetical... 31 0.90
Z83216-4|CAB62781.1| 314|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z68320-4|CAA92705.4| 448|Caenorhabditis elegans Hypothetical pr... 29 3.6
U64835-6|AAG24199.1| 341|Caenorhabditis elegans Serpentine rece... 29 3.6
AL008881-4|CAH10844.2| 448|Caenorhabditis elegans Hypothetical ... 29 3.6
AF098985-4|AAC67422.2| 373|Caenorhabditis elegans Synaptotagmin... 29 3.6
AF016680-1|AAB66163.2| 458|Caenorhabditis elegans Synaptotagmin... 29 3.6
Z68493-11|CAA92798.2| 174|Caenorhabditis elegans Hypothetical p... 29 4.8
U41037-3|AAA82389.1| 378|Caenorhabditis elegans Hypothetical pr... 29 4.8
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 28 8.4
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 28 8.4
>AL024499-2|CAB54260.2| 242|Caenorhabditis elegans Hypothetical
protein H38K22.2b protein.
Length = 242
Score = 45.2 bits (102), Expect = 5e-05
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +1
Query: 571 MSSLGSSEKISETKINLLFNQY---KDSI-EDAILAEGIENLCNDLNLSPDDFKVLILAW 738
M+ L S +K TKI LFNQY KD + E + GI L DL D +VL+LAW
Sbjct: 1 MNRLKSDQK---TKIERLFNQYVDPKDKVGEKRMGPHGINRLLTDLGYEATDRRVLVLAW 57
Query: 739 KLNASXMC 762
K A C
Sbjct: 58 KFTAQTQC 65
>AL132948-33|CAD57708.2| 734|Caenorhabditis elegans Hypothetical
protein Y39B6A.43b protein.
Length = 734
Score = 31.1 bits (67), Expect = 0.90
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 481 SCDPL--NVQKNLVCEKTPKLFNPKLPSIPRTMSSLGSSEKISETKINLL 624
S DP+ N+QKNL P L P P+ +S S+E + E K+ L+
Sbjct: 620 SMDPVVENLQKNLAPSPPPLLKRVTFPPEPQQSTSSTSAENLHELKLQLI 669
>AL132948-32|CAD31833.3| 731|Caenorhabditis elegans Hypothetical
protein Y39B6A.43a protein.
Length = 731
Score = 31.1 bits (67), Expect = 0.90
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 481 SCDPL--NVQKNLVCEKTPKLFNPKLPSIPRTMSSLGSSEKISETKINLL 624
S DP+ N+QKNL P L P P+ +S S+E + E K+ L+
Sbjct: 617 SMDPVVENLQKNLAPSPPPLLKRVTFPPEPQQSTSSTSAENLHELKLQLI 666
>Z83216-4|CAB62781.1| 314|Caenorhabditis elegans Hypothetical
protein C08F11.5 protein.
Length = 314
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 208 VEVLDVEHF-LCIQNYITTVYPMGHCLSCFKSQANAEIRSITGPHAKNDE 354
+E+L +F LC++N+ +P+ + +S FK A +I +IT + DE
Sbjct: 143 LEMLQSLNFKLCVKNFSVARFPLKYVISFFKCLAAEQIENITFYSDEYDE 192
>Z68320-4|CAA92705.4| 448|Caenorhabditis elegans Hypothetical
protein W07A12.4 protein.
Length = 448
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +1
Query: 487 DPLN-VQKNLVCEKTPKLFNPKLPSIPRTMSSLGSSEKIS---ETKINLLFNQYKDS 645
D LN V+K+ + E PKLF P L + ++L S ++S TK L QY+D+
Sbjct: 257 DELNEVEKSAISEMHPKLFQPPL-LLSYKFNALPLSSRMSCKDFTKKQFLLRQYEDN 312
>U64835-6|AAG24199.1| 341|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 9 protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = -2
Query: 274 PLDKLL*YNFEYIKNVPHPKLRLKSFSLLLYIM*ELN*FFFLLSKYKRYIFLFAFYRSYK 95
PLD + + F + + HP L S+S LL++ L Y+ YI A ++K
Sbjct: 67 PLDYAMAHIFYGLCHFGHPFLCYASWSALLHLFIHSMWSLLLSFAYRNYILSSAPPSTWK 126
Query: 94 VRFQ*LILYVPKST 53
V + +Y+P T
Sbjct: 127 VFMFSVFIYIPSFT 140
>AL008881-4|CAH10844.2| 448|Caenorhabditis elegans Hypothetical
protein W07A12.4 protein.
Length = 448
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +1
Query: 487 DPLN-VQKNLVCEKTPKLFNPKLPSIPRTMSSLGSSEKIS---ETKINLLFNQYKDS 645
D LN V+K+ + E PKLF P L + ++L S ++S TK L QY+D+
Sbjct: 257 DELNEVEKSAISEMHPKLFQPPL-LLSYKFNALPLSSRMSCKDFTKKQFLLRQYEDN 312
>AF098985-4|AAC67422.2| 373|Caenorhabditis elegans Synaptotagmin
protein 6 protein.
Length = 373
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 490 PLNVQKNLVCEKTPKLFNPKL--PSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAIL 663
P+++ + L CE+T +LF P++ P++ M S + + +++ N +K SI D +
Sbjct: 37 PVDIDE-LDCEQTARLFRPEVLAPTLTVDMESRKVQPSL-KARLSQSINPWKTSIIDQLR 94
Query: 664 AEGIENLCNDLNLS 705
E + +N S
Sbjct: 95 PEVVSEFRGRINFS 108
>AF016680-1|AAB66163.2| 458|Caenorhabditis elegans Synaptotagmin
protein 5 protein.
Length = 458
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +1
Query: 46 WYWWILVHIISITEIL--PCSFY 108
W+WW+LV I+S+ ++ C+ Y
Sbjct: 4 WWWWVLVAILSLCAVILSSCALY 26
>Z68493-11|CAA92798.2| 174|Caenorhabditis elegans Hypothetical
protein C33A12.15 protein.
Length = 174
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Frame = +1
Query: 484 CDPLNVQKNLVCEKTPKLFNPKL----PSIPRTMSSLGSSE--KISETKINL 621
CDP N +++ C KT K+F P+ IP+ + ++G E KI K L
Sbjct: 107 CDPSNTIRSMQCAKTIKIFIPQEFVSDGHIPKMIFNIGDVELTKIETEKYGL 158
>U41037-3|AAA82389.1| 378|Caenorhabditis elegans Hypothetical
protein T24C12.1 protein.
Length = 378
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = -3
Query: 360 CHLIIFCVGSCDTSYFSISLRFETAETVAHWINCCNIILNT*KMFHIQNFDLRASHSFYT 181
C + I C S +I R HWI CC +I++ +F + A S Y+
Sbjct: 122 CFINICLALLCIASIVAIRKRQIGVVVFCHWIKCCTLIVDAVMVFVFASIMSTAHTSLYS 181
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +1
Query: 232 FLCIQ-NYITTVYPMGHCLSCFKSQAN-AEI-RSITGPHA 342
+ C + NYI + P+ HCLSC ++ + E+ + +GPHA
Sbjct: 771 YFCTKCNYIFSKDPVVHCLSCEVTEDDLIEVYHAASGPHA 810
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +1
Query: 232 FLCIQ-NYITTVYPMGHCLSCFKSQAN-AEI-RSITGPHA 342
+ C + NYI + P+ HCLSC ++ + E+ + +GPHA
Sbjct: 771 YFCTKCNYIFSKDPVVHCLSCEVTEDDLIEVYHAASGPHA 810
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,487,558
Number of Sequences: 27780
Number of extensions: 313308
Number of successful extensions: 789
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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