Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a02
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    28   1.6  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   2.1  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    26   4.8  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    26   4.8  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    26   6.3  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   8.3  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    25   8.3  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.3  

>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 332  SKVLTRVLQSCILNGFIFLLSILVFEYVLLPAIKY 436
            S+ L  +L SC+ N  +FL  + + +Y L+  I Y
Sbjct: 1824 SEQLKSLLHSCLWNDTLFLSKLNIMDYSLIVGIDY 1858


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +2

Query: 536  LPLFLLSKLVNSLWFQDIADSAYRHRRGRPQFMSSVSKIIADSLFSLLVQALFLVQ--SM 709
            L  +LL +  ++LW + + DSAYR         ++V +       S++V+AL  V   S 
Sbjct: 940  LARYLLKRSDSNLWSEVLQDSAYRRPLLDQVIATAVPESSDPEAVSIVVKALMEVDLPSQ 999

Query: 710  LVSML 724
            L+ +L
Sbjct: 1000 LIELL 1004


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 643 KQNNSGLPVQFAGASFIFSTEHV 711
           KQN +GLP  F+G S ++ T  V
Sbjct: 298 KQNTTGLPSNFSGISQLYVTYRV 320


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
 Frame = +2

Query: 359 SCILN--GFIFL-LSILVFEYVLLPAIKYLVMVIFG 457
           S +LN   F+ L LS+++FE  + PA+K+  +++FG
Sbjct: 260 SVVLNVRKFVSLCLSLILFENEMGPAVKFGALLVFG 295


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 254 ERALSRSPQTDADSKHKQKQPKVRQESKVLTRVLQSCI 367
           +R  S SP T +++  KQK PK     + L + L S +
Sbjct: 272 KRMQSSSPSTTSNTNEKQKGPKAIARIEFLIKKLTSLL 309


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 539 PLFLLSKLVNSLWFQDIADSAYRHRRGRPQFMSSVSK 649
           P F+L     S+   ++A + Y H RGRP    ++S+
Sbjct: 47  PKFVLDAAKKSI--DEVACNQYSHTRGRPSLRKALSE 81


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 25/92 (27%), Positives = 42/92 (45%)
 Frame = +2

Query: 149 LTMESITSFSVSLIKGFVDSLRGVTVLLYLDKEINERALSRSPQTDADSKHKQKQPKVRQ 328
           L ++SITS   +LI   +D  R   +L  +    +   LS + +T  +S  K K   +RQ
Sbjct: 221 LFIKSITSAISALILSPLDIARTKIILFPIS---SSSYLSSASETSGNSHKKFKPLTIRQ 277

Query: 329 ESKVLTRVLQSCILNGFIFLLSILVFEYVLLP 424
             K L     S ++   +  +S+  F   +LP
Sbjct: 278 CLKALPFYCPSSLILPTVCYVSLPPFVSSVLP 309


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 24/90 (26%), Positives = 39/90 (43%)
 Frame = -3

Query: 441 TKYLMAGSRTYSNTKILSKNMKPLSIHDCNTLVSTFDSCLTLGCFCLCLESASVCGDRLK 262
           T+Y +  S T+++      N      H+  TLVSTF   ++     L  ++   C   L+
Sbjct: 302 TEYSIPSSVTFNSQNDCFSNAMNYLEHEYETLVSTFTLSVSEHWEDLLRKATDSCQKELE 361

Query: 261 ARSFISLSRYNSTVTPLKLSTNPLISETEK 172
           A   IS    N  V  ++ S   LI + E+
Sbjct: 362 AFEEIS----NLRVLAVENSLGNLIQKAEE 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,561
Number of Sequences: 5004
Number of extensions: 61759
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)