Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25a02
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0546 - 19325526-19326054,19327109-19327631,19327898-193281... 31 1.2
03_02_0887 - 12188178-12188224,12188464-12188692 31 1.2
02_04_0012 - 18891917-18893091,18893209-18893323,18893425-188934... 31 1.2
02_04_0009 - 18865087-18866249,18866357-18866471,18866555-188666... 31 1.2
01_07_0061 + 40818077-40818241,40818494-40818716,40819015-408192... 31 1.2
04_03_0130 - 11622139-11623325,11626144-11627116 28 6.6
03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238 28 6.6
09_06_0291 - 22066550-22067610,22067721-22067975,22068093-220682... 28 8.7
04_04_1138 - 31162440-31163488,31163910-31164164,31164386-311645... 28 8.7
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 28 8.7
>07_03_0546 -
19325526-19326054,19327109-19327631,19327898-19328152,
19328283-19328472,19328473-19328525,19329295-19329555,
19329670-19329720,19329873-19330121,19330225-19330453,
19332245-19332559
Length = 884
Score = 30.7 bits (66), Expect = 1.2
Identities = 9/27 (33%), Positives = 21/27 (77%)
Frame = +2
Query: 389 LSILVFEYVLLPAIKYLVMVIFGHDPG 469
LS++++ +L+P +KY ++ ++G+D G
Sbjct: 154 LSLVIYTLILIPLLKYTLIALWGNDDG 180
>03_02_0887 - 12188178-12188224,12188464-12188692
Length = 91
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +2
Query: 266 SRSPQTDADSKHKQKQPKVRQESKVLTRVLQSCILNGFI 382
++ Q ++K KQ++ K+++ K +VLQ+CIL+ I
Sbjct: 49 TKETQNLENTKKKQEEGKIKRNKKAPVQVLQNCILDDSI 87
>02_04_0012 -
18891917-18893091,18893209-18893323,18893425-18893477,
18893553-18893813,18896451-18896501,18896629-18896877,
18897046-18897268,18897371-18897487
Length = 747
Score = 30.7 bits (66), Expect = 1.2
Identities = 9/28 (32%), Positives = 22/28 (78%)
Frame = +2
Query: 386 LLSILVFEYVLLPAIKYLVMVIFGHDPG 469
+LS++++ +L+P +KY+ +V++ +D G
Sbjct: 85 VLSLMLYTLILIPMVKYVFIVLYANDNG 112
>02_04_0009 -
18865087-18866249,18866357-18866471,18866555-18866607,
18866703-18866963,18867100-18867150,18867255-18867503,
18867634-18867856,18867958-18868071
Length = 742
Score = 30.7 bits (66), Expect = 1.2
Identities = 9/28 (32%), Positives = 22/28 (78%)
Frame = +2
Query: 386 LLSILVFEYVLLPAIKYLVMVIFGHDPG 469
+LS++++ +L+P +KY+ +V++ +D G
Sbjct: 84 VLSLILYTLILIPMVKYVFIVLYANDNG 111
>01_07_0061 +
40818077-40818241,40818494-40818716,40819015-40819263,
40819455-40819505,40819611-40819871,40819994-40820046,
40820234-40820348,40820475-40820696,40821280-40822253
Length = 770
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 371 NGFIFLLSILVFEYVLLPAIKYLVMVIFGHDPG 469
N + ++S++++ VLLP IKY +V+ +D G
Sbjct: 96 NDILGVMSLIIYTVVLLPLIKYCFIVLRANDNG 128
>04_03_0130 - 11622139-11623325,11626144-11627116
Length = 719
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 134 LVLELLTMESITSFSVSLIKGFVDSLRGVTVLLYLDKEI 250
L+LELLT S VSL F D+++ + ++DKEI
Sbjct: 587 LLLELLTRRKPLSNEVSLASLFQDAMKKGNIDHHIDKEI 625
>03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238
Length = 697
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -3
Query: 372 LSIHDCNTLVSTFDSCLTLGCFCLCLESASVCGDRLKARSFISL-SRYNSTVTPL--KLS 202
LS+ +T + + CL GCFC+ + + + L A L SR+ V + +LS
Sbjct: 257 LSVAHGDTWFTRWGYCLARGCFCVSTSTYAASVEALAALPVDYLRSRHVRRVVTIYRRLS 316
Query: 201 TNPLISETEKL 169
PL++ E L
Sbjct: 317 NKPLVTVREFL 327
>09_06_0291 -
22066550-22067610,22067721-22067975,22068093-22068207,
22068329-22068381,22068467-22068724,22069110-22069160,
22069577-22069822,22070427-22070652,22070984-22071100
Length = 793
Score = 27.9 bits (59), Expect = 8.7
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 389 LSILVFEYVLLPAIKYLVMVIFGHDPG 469
LS++++ L+P +KY+ +V+ +D G
Sbjct: 87 LSLIIYSLTLIPLVKYVFIVLRANDNG 113
>04_04_1138 -
31162440-31163488,31163910-31164164,31164386-31164500,
31164523-31164579,31164580-31164632,31164721-31164981,
31165243-31165293,31165395-31165430,31165815-31166040,
31166082-31166132,31166346-31166465
Length = 757
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 389 LSILVFEYVLLPAIKYLVMVIFGHDPGVA 475
LS++++ L+P +KY+ +V+ +D G A
Sbjct: 105 LSLIIYTLTLIPLLKYVFVVLRANDNGQA 133
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 306 CLCLESASVCGDRLKARSFISLSRYNSTVTPLKLSTNPLIS 184
CL L CG R+ SF+S R S + P++ S PL+S
Sbjct: 17 CLDLAQRLACGHRV---SFVSTPRNISRLPPVRPSLAPLVS 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,302,076
Number of Sequences: 37544
Number of extensions: 357077
Number of successful extensions: 753
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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