Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25a02
(725 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-8|AAC48294.1| 315|Caenorhabditis elegans Hypothetical pr... 49 4e-06
AC024779-2|AAK68485.1| 299|Caenorhabditis elegans Serpentine re... 31 0.63
AC024779-1|AAP86615.1| 304|Caenorhabditis elegans Serpentine re... 31 0.63
U15167-1|AAB66360.1| 445|Caenorhabditis elegans serotonin recep... 30 1.5
AC084154-13|AAK29875.2| 445|Caenorhabditis elegans Serotonin/oc... 30 1.5
AF016678-7|AAB66154.3| 340|Caenorhabditis elegans Serpentine re... 30 1.9
U53338-2|AAA96190.2| 558|Caenorhabditis elegans Ammonium transp... 29 4.5
Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr... 28 7.8
U20861-16|AAA62300.1| 331|Caenorhabditis elegans Dynactin compl... 28 7.8
AY255667-1|AAQ96604.1| 159|Caenorhabditis elegans MiRP4 protein. 28 7.8
AF099925-6|AAC69501.1| 159|Caenorhabditis elegans Mirp k channe... 28 7.8
>U00033-8|AAC48294.1| 315|Caenorhabditis elegans Hypothetical
protein F37C12.2 protein.
Length = 315
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/66 (34%), Positives = 38/66 (57%)
Frame = +2
Query: 527 IWVLPLFLLSKLVNSLWFQDIADSAYRHRRGRPQFMSSVSKIIADSLFSLLVQALFLVQS 706
I ++P+F S+++ +LWF DI+ + R + P + S ++A +L S L Q FL+Q
Sbjct: 116 ILIIPIFFASRIIQALWFSDISGACMRALKLPPPPVVPFSSMLAGTLISALHQIFFLIQG 175
Query: 707 MLVSML 724
ML L
Sbjct: 176 MLSQYL 181
>AC024779-2|AAK68485.1| 299|Caenorhabditis elegans Serpentine
receptor, class x protein50, isoform a protein.
Length = 299
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -3
Query: 249 ISLSRYNSTVTPLKLSTNPLISETEKLVMLSIVRSSKTKHFLMFY 115
ISL+R+ S V P+K T +S T+KL+M S + +L Y
Sbjct: 78 ISLNRFCSIVAPIKYDTIFSMSNTKKLIMFSWACAVLPSFYLYIY 122
>AC024779-1|AAP86615.1| 304|Caenorhabditis elegans Serpentine
receptor, class x protein50, isoform b protein.
Length = 304
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -3
Query: 249 ISLSRYNSTVTPLKLSTNPLISETEKLVMLSIVRSSKTKHFLMFY 115
ISL+R+ S V P+K T +S T+KL+M S + +L Y
Sbjct: 89 ISLNRFCSIVAPIKYDTIFSMSNTKKLIMFSWACAVLPSFYLYIY 133
>U15167-1|AAB66360.1| 445|Caenorhabditis elegans serotonin receptor
precursor protein.
Length = 445
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = +2
Query: 506 LLMTFRMIWVLPLFLLSKLVNSLWFQDIADSAYRHRRGRPQFMSSVSKIIADSLFSLLVQ 685
L+ T + VL + +LS + +L F +A R RGRPQ+ S +AD L ++V
Sbjct: 48 LVQTVILASVLLVLILSCFIGNL-FVILAIIMERDLRGRPQYYLIFSLAVADLLVGMIVT 106
Query: 686 AL 691
L
Sbjct: 107 PL 108
>AC084154-13|AAK29875.2| 445|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 4 protein.
Length = 445
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = +2
Query: 506 LLMTFRMIWVLPLFLLSKLVNSLWFQDIADSAYRHRRGRPQFMSSVSKIIADSLFSLLVQ 685
L+ T + VL + +LS + +L F +A R RGRPQ+ S +AD L ++V
Sbjct: 48 LVQTVILASVLLVLILSCFIGNL-FVILAIIMERDLRGRPQYYLIFSLAVADLLVGMIVT 106
Query: 686 AL 691
L
Sbjct: 107 PL 108
>AF016678-7|AAB66154.3| 340|Caenorhabditis elegans Serpentine
receptor, class i protein45 protein.
Length = 340
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Frame = -3
Query: 414 TYSNTKILSKNMKPLSIHDCNTLVSTFDSCLTLGCFCLCLESASVCGDRLK----ARSFI 247
TY K N+K +IH N + C LG F + A D +K AR I
Sbjct: 183 TYPEFKAEFSNLKNFTIHQLNIYMFLVGVCGFLGIFGVFQVIAMTTVDTMKMLKGARRTI 242
Query: 246 SLSRYNSTVTPLKLSTNPLISET 178
S YN + L+ T ++ T
Sbjct: 243 SAQSYNRQKSALRSLTAQFLAST 265
>U53338-2|AAA96190.2| 558|Caenorhabditis elegans Ammonium
transporter homolog protein4 protein.
Length = 558
Score = 28.7 bits (61), Expect = 4.5
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +2
Query: 485 WAWMQPFLLMTFRMIWVLPLFLLSKLVNSL 574
W W+ ++T+ ++W+ P+F L + + L
Sbjct: 379 WQWVCALAIVTWSILWMWPIFALLRKIGKL 408
>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical
protein W09G3.6 protein.
Length = 1125
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 564 TSLLNKNSGSTHIIRKVISRNGCI-HAHTLWAT 469
TSLL G +++R RNG I +H W+T
Sbjct: 786 TSLLMAVCGGANVLRDEFQRNGAIPQSHVAWST 818
>U20861-16|AAA62300.1| 331|Caenorhabditis elegans Dynactin complex
component protein2 protein.
Length = 331
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 209 LRGVTVLLYLDKEINERALSRSPQTDADSKHKQKQPKVRQESKVLT 346
L VL L+KE+ +++S A +H + P VR +SKV T
Sbjct: 120 LLNAEVLENLEKEVKTLQVAQSNGKTARVEHDVELPNVRTDSKVAT 165
>AY255667-1|AAQ96604.1| 159|Caenorhabditis elegans MiRP4 protein.
Length = 159
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 189 ISETEKLVMLSIVRSSKTKHFLMFYFV 109
+SET+K V+LS+ S H MFYF+
Sbjct: 23 MSETKKNVLLSLHSLSSLIHVAMFYFL 49
>AF099925-6|AAC69501.1| 159|Caenorhabditis elegans Mirp k channel
accessory subunitprotein 2, isoform a protein.
Length = 159
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 189 ISETEKLVMLSIVRSSKTKHFLMFYFV 109
+SET+K V+LS+ S H MFYF+
Sbjct: 23 MSETKKNVLLSLHSLSSLIHVAMFYFL 49
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,462,596
Number of Sequences: 27780
Number of extensions: 343270
Number of successful extensions: 907
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -