Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a02
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   1.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   6.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.0  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 557 YLTRTVA-APISFGKSLAGMVASMPTHYGLHQDHD 456
           ++TR +A A I+    LAG+++ +P   GLH+ ++
Sbjct: 136 WVTRRIAVAGIAVVWLLAGLISFVPISLGLHRANE 170


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = +2

Query: 485 WAWMQPFLLMTFRMIW 532
           W W+ PF ++    +W
Sbjct: 179 WFWVTPFTVLPLLKVW 194


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = +2

Query: 485 WAWMQPFLLMTFRMIW 532
           W W+ PF ++    +W
Sbjct: 179 WFWVTPFTVLPLLKVW 194


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/38 (21%), Positives = 20/38 (52%)
 Frame = +2

Query: 251 NERALSRSPQTDADSKHKQKQPKVRQESKVLTRVLQSC 364
           NER   +  +T  +    +++ +  +E K+++ +  SC
Sbjct: 274 NEREYRKYRETSKERSRDRRERERSKEPKIISSLSNSC 311


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -3

Query: 456 PKITITKYLMAGSRTYSNTKILSKNMKPLSIHDCNTL 346
           P    +KY + G +      I    + P+ IHD  TL
Sbjct: 355 PDPLASKYELHGLKFQWTDGIFGMALSPVDIHDDRTL 391


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -3

Query: 411 YSNTKILSKNMKPLSIHDCNTLVSTFDSCLTL 316
           +SN  I+ K++K     +   +   +D+C+T+
Sbjct: 27  HSNQLIIDKSLKGWKEVEYEVVRDAYDNCITV 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,730
Number of Sequences: 438
Number of extensions: 3995
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)