Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a01
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    29   0.36 
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    27   0.84 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   3.4  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    25   4.5  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    25   5.9  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   5.9  

>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 176 ISSQYDEIMLMFLEKNIHIYTHK 244
           ++S+ DE+   FL++ IH YTHK
Sbjct: 385 LTSENDELSSKFLKQIIHAYTHK 407


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 262 YLYMYIFVCIYMYIFFQKH*H 200
           Y+Y YI + IY+Y FF    H
Sbjct: 38  YIYKYISILIYLYSFFSSGVH 58


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +2

Query: 137  LVIWCSYCDESIIISSQYDEIMLMFLEKNIHIYTHKNIHIQI 262
            L+IW   C ++  +  +YD ++  F+E  I ++     H ++
Sbjct: 1578 LIIWKLICQKACSLLFKYDILLDSFIEDCIRMFFENGNHQEL 1619


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 259 LYMYIFVCIYMYIFFQK 209
           LY+Y+F CIY  I FQK
Sbjct: 344 LYLYLFFCIYK-IKFQK 359


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 379 YAVTIMKPLNYHLINFP*WQIVRV 308
           Y +TI + + + LI FP W+ +++
Sbjct: 222 YGITIAREIPFTLIQFPIWEHLKL 245


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 120 IPRVSRRPRNFHFYGKSLKLL 58
           IP  S+RP N+ FY + + +L
Sbjct: 179 IPSPSKRPANYKFYEQRIAML 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,540,526
Number of Sequences: 5004
Number of extensions: 28344
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)