Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a01
         (404 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1123 - 10385215-10385574,10385676-10385810,10386385-103870...    29   1.4  
01_05_0580 + 23398777-23399358,23399565-23399708,23399820-23400233     27   5.6  
03_05_0138 + 21172149-21172232,21172662-21172799,21172920-21173084     27   7.5  

>07_01_1123 -
           10385215-10385574,10385676-10385810,10386385-10387091,
           10387158-10387455
          Length = 499

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = +2

Query: 212 LEKNIHIYTHKNIHIQIHICIKEKLETVLLLYNAHNLPSWKVYEVIV*WFHDCDCINSTI 391
           LEK +HI     + +++ + +  KLET+ +L N +++ S   +  +V  F   + +N T 
Sbjct: 287 LEKLLHIERSMGLGVRVSVIMAPKLETLGILDNVNDVYSRLNFGTVV--FKGFEVVNFTR 344

Query: 392 P 394
           P
Sbjct: 345 P 345


>01_05_0580 + 23398777-23399358,23399565-23399708,23399820-23400233
          Length = 379

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 18/76 (23%), Positives = 38/76 (50%)
 Frame = +2

Query: 125 SIACLVIWCSYCDESIIISSQYDEIMLMFLEKNIHIYTHKNIHIQIHICIKEKLETVLLL 304
           S+ C++ W S  +E  ++S+   E ++++ +  +H    K    +I IC   KL+  +  
Sbjct: 144 SLRCMLHWASSLEELAMVSTPCLERLILWRDDALHWSDCK----KIKICSMPKLQNDMKA 199

Query: 305 YNAHNLPSWKVYEVIV 352
             A  +PS +V  + +
Sbjct: 200 SAATVVPSVEVLAMTI 215


>03_05_0138 + 21172149-21172232,21172662-21172799,21172920-21173084
          Length = 128

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 179 SSQYDEIMLMFLEKNIHIYTHKNIHIQIHICIKEKLETVLLLYNAHNLPSWKVYEVIV 352
           +S Y    L  L K  H+ + K +H++    I  K + +LLLY     P+ K+  +++
Sbjct: 53  NSSYAIHRLKVLNKLRHLLSIKLVHLKRQFSILNKRKELLLLYYILLKPNLKIATLLL 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,832,617
Number of Sequences: 37544
Number of extensions: 146628
Number of successful extensions: 313
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)