Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24p23
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98...    30   1.2  
05_03_0148 + 8922959-8923855                                           28   5.0  
01_01_0649 - 4939939-4940835                                           28   5.0  
08_01_0632 - 5479118-5479555,5479701-5479866,5480452-5480565,548...    28   6.6  
03_01_0166 + 1362254-1363138,1363225-1363545                           28   6.6  

>02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-989673,
            990244-990510,990840-992458,992571-993327,993560-995506
          Length = 1727

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 595  LFPSGVVAASVVHIEVFYCKCYFQLLHIHT-LQLAYSFQYLVAVLTFCRYLLLLDISQC 422
            LFP  ++   + ++E     C+F  LH  T L+L  S + +   L +C  L  L I  C
Sbjct: 1493 LFPPSLIELEISNLEGSIHPCFFSCLHSLTRLELGDSPELVTLQLGYCTALESLTIYDC 1551


>05_03_0148 + 8922959-8923855
          Length = 298

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 484 ENCRPIARYGYVTAESSIYNKRPRCGQPRPQPHQRETTAY 603
           EN + +  +G + A+  I   RP CG+  P P   ET  +
Sbjct: 20  ENLKEMVAHGVLPAKE-IIGWRPACGEAFPTPDTHETVVF 58


>01_01_0649 - 4939939-4940835
          Length = 298

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 484 ENCRPIARYGYVTAESSIYNKRPRCGQPRPQPHQRETTAY 603
           EN + +  +G + A+  I   RP CG+  P P   ET  +
Sbjct: 20  ENLKEMVAHGVLPAKE-IIGWRPACGEAFPTPDTHETVVF 58


>08_01_0632 -
           5479118-5479555,5479701-5479866,5480452-5480565,
           5480713-5480849
          Length = 284

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 526 QLLHIHTLQLAYSFQYLVAVLTFCRYLLLLDISQC 422
           QL H+    +    + L+A++  C +L LLD+S+C
Sbjct: 197 QLRHLILGSICIGNEELMAIIDACPHLELLDVSKC 231


>03_01_0166 + 1362254-1363138,1363225-1363545
          Length = 401

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 484 ENCRPIARYGYVTAESSIYNKRPRCGQPRPQPHQRETTAY 603
           EN + I  +G + A+  I   RP CG+  P P   E   +
Sbjct: 20  ENLKEIVAHGVLPAKE-IIGWRPACGEAFPSPDTHEVVVF 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,698,177
Number of Sequences: 37544
Number of extensions: 220481
Number of successful extensions: 541
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)