Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24p21
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar... 42 1e-04
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 33 0.038
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein... 28 1.1
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 27 2.5
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 2.5
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo... 27 3.3
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 26 4.4
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 4.4
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 7.7
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 25 7.7
>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 256
Score = 41.5 bits (93), Expect = 1e-04
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Frame = +1
Query: 139 LRDGQEIKVEGATVKVHHTPGHTTDHIVLTC--LEENILFSGDCILGEGTA-VFEDLYTY 309
L+D + +++ ++ HTP HT D I E+ +F+GD + G FE
Sbjct: 97 LQDKETLRIGNVQIEALHTPCHTRDSICFYAHSSNEHAVFTGDTLFNAGCGRFFEGTAAE 156
Query: 310 MK-SLQKILDLKPN--IIYPGH 366
M +L +L PN +IYPGH
Sbjct: 157 MHIALNAVLSSLPNNTVIYPGH 178
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 33.1 bits (72), Expect = 0.038
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Frame = +1
Query: 142 RDGQEIKVEGATVKVHHTPGHTTDHI--VLTCLEENILFSGDCILGEGTAVF--EDLYTY 309
+D + KV V+ HTP HT D I ++ + +F+GD + G F D
Sbjct: 98 KDKEIFKVGEVQVEALHTPCHTQDSICYYVSSPSKRAVFTGDTLFTSGCGRFFEGDAKQM 157
Query: 310 MKSLQKILDLKPN--IIYPGH 366
+L +L P+ + YPGH
Sbjct: 158 DYALNHVLAALPDDTVTYPGH 178
>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 246
Score = 28.3 bits (60), Expect = 1.1
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +1
Query: 208 TDHIVLTCLEENILFSGDCILGEGTAVFEDLYTYMKSLQKI--LDLKPNIIYPGHGNIVK 381
TD I LE IL GD +GE + TY + + + + PN P +I++
Sbjct: 77 TDDIDKIILE--ILQKGDFQVGEKERHHQMSSTYRDIVSHVTAMCMDPNSKRPYPASIIE 134
Query: 382 EPVEKIEYYIAHRNQREEQILEALKTNSDKN 474
+ + + ++ + Q LEA+K +KN
Sbjct: 135 KALSDCGFSVSTSKTAKSQALEAIKKLQEKN 165
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 49 IAKNPIIWKHKKSSEDSADNELPASIPI 132
+AK+ KH S+ED D+ LPA +PI
Sbjct: 1 MAKDKKDHKHSGSTEDEYDSYLPALMPI 28
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 544 MQLLATSVLVSRCILFSLNPFHLDFYQNLFSKLLIFVL 431
M L A ++S CILFSL P + ++ +L+F L
Sbjct: 1706 MNLFAMDFILSHCILFSLTPILCIPFIDIPHSVLLFWL 1743
>SPAC9E9.14 |vps24||vacuolar sorting protein
Vps24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 370 NIVKEPVEKIEYYIAHRNQREEQILEALKTNSDKNLNEMD 489
N++ P EK HR Q +Q L +L K+ E+D
Sbjct: 176 NVIPAPSEKAADAATHREQSLKQALPSLSNGIAKDSTEID 215
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 26.2 bits (55), Expect = 4.4
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +1
Query: 364 HGNIVKEPVEKIEYYIAHRNQREEQILEALKTNSDKNLNEMDLVKII---YTETPEHLWP 534
HG IV++ +KIE + + + I E L + SD + E + + + T PE++
Sbjct: 258 HGYIVRDINQKIEQQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQA 317
Query: 535 AAAYNV 552
NV
Sbjct: 318 MLLENV 323
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 76 HKKSSEDSADNELPASIPIEWLR 144
H K+++ NELP IP WLR
Sbjct: 584 HSKNTDKHVGNELPQDIP-SWLR 605
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = -3
Query: 550 HYMQLLATS----VLVSRCILFSLNPFHLDFYQN 461
HY++ L+ S VL+SRC L+ HLD N
Sbjct: 2253 HYLKCLSESDENDVLISRCCTMWLSNSHLDELNN 2286
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 412 LYNIQFFQRVPLLYSHDQGK*CL 344
L+N+ FQ+V LL H G CL
Sbjct: 297 LWNLATFQQVALLEGHSSGVTCL 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.134 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,743
Number of Sequences: 5004
Number of extensions: 62406
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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