Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24p21
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   6.2  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 402 FNFFNGFLYYIPMTRVNNVW 343
           FN F G L Y+ +T  + VW
Sbjct: 97  FNDFGGRLKYLTLTDASRVW 116


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 402 FNFFNGFLYYIPMTRVNNVW 343
           FN F G L Y+ +T  + VW
Sbjct: 97  FNDFGGRLKYLTLTDASRVW 116


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +1

Query: 130 IEWLRDGQEIKVEGATVKV 186
           + WL+DG+ + +E A +++
Sbjct: 339 VSWLKDGKPLGLEEAVLRI 357


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 22  GGVENIYKTIAKNPIIWKHKKSSEDS 99
           GG+ N+ +   + P  WK  K++E++
Sbjct: 209 GGLMNVERFPYQPPFAWKILKAAEEA 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.134    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,219
Number of Sequences: 438
Number of extensions: 4021
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)