Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24p19
         (181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   1.3  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    24   2.3  
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   4.0  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    23   5.3  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    23   7.1  
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    22   9.3  

>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 128 LIYHVKIFYINYEQIKKK 181
           L+Y  K  Y+NY+++KK+
Sbjct: 11  LMYEYKYSYVNYDKLKKE 28


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 96  NRQFQFCYPTSRVRCNENNILKR 28
           N  ++FC   SR   ++N +LKR
Sbjct: 776 NEIYEFCGTHSRAEVHKNEVLKR 798


>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 7   FPETDGFSFQDIVFITTYSRSWIAK 81
           F   + F F  +VFI  +   W AK
Sbjct: 41  FTYKEAFVFNTVVFIIVFLTGWAAK 65


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 80   FAIQLLEYVVMKTIS*KENPSV 15
            + +  LEYV  KT S  E P +
Sbjct: 1165 YCVHTLEYVFQKTSSANERPDI 1186


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 110 LSSYKTGNFSFAIQLLEYVVMKTIS 36
           + + K GN   AI+ LEY++ +  S
Sbjct: 266 IKAKKDGNLENAIEFLEYIMPEVAS 290


>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 6   FSRNRWVFFSRYC 44
           F+RN W +F  +C
Sbjct: 173 FNRNYWAYFEDWC 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 643,560
Number of Sequences: 5004
Number of extensions: 7829
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)