Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24p18
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    27   0.80 
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   1.4  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    27   1.4  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   2.4  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   2.4  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    25   3.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   4.3  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    24   7.4  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    24   7.4  
SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch...    24   7.4  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    24   7.4  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    24   9.8  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    24   9.8  

>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 44  AASRQETVARKA--ARDLFASLSNGEQYITTVQLERRIRE 157
           AA+ Q+ + + A   +D  A L  GEQY   VQL++ + E
Sbjct: 417 AANLQKELPKDANKLKDFKAKLGEGEQYPELVQLQKEVAE 456


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 191  RPLSSVTSYCKSLLSDVRVEPLLCIVHHSTNWQ 93
            + L+S+  +   L+SD+ V+P L +   S N Q
Sbjct: 1565 KALNSMQEFTSQLISDINVDPALFVQSTSVNTQ 1597


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 65  VARKAARDLFASLSNGEQY 121
           V RK+ RDL  SLSNG  Y
Sbjct: 708 VERKSIRDLIQSLSNGRLY 726


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -1

Query: 308  FHYCLCDRQLVGQMVLMLVRHRLAHLPLLSYRRQENR 198
            FHYC C +   G M+   + H   H   +   +++ R
Sbjct: 1171 FHYCFCRQPEAGMMIECELCHEWYHAKCMKMSKKKLR 1207


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 83  RDLFASLSNGEQ-YITTVQLERRIREICN 166
           +D+   L+  E  Y TT++LE+R +EI N
Sbjct: 458 KDIAIRLNTAEYIYRTTIELEKRFQEISN 486


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/60 (20%), Positives = 29/60 (48%)
 Frame = -1

Query: 278 VGQMVLMLVRHRLAHLPLLSYRRQENRCLRPLSSVTSYCKSLLSDVRVEPLLCIVHHSTN 99
           +GQ++ +  +  +  +   +Y    + C+     +  YC +LL D+  +  L ++H S +
Sbjct: 690 LGQIIGICAKDEVPEVRQSAYALLGDMCMYCFDQIRPYCDALLVDMLPQMQLPLLHVSAS 749


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 387 STVKLRISSFEHLSGTSSSRSCEVRSVPL 301
           ST  L ISS   +SG+SS  S  + ++P+
Sbjct: 631 STSSLMISSSSIISGSSSILSSSISTIPI 659


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 194 LRPLSSVTSYCKSLLSD 144
           L PL S+T+ C+S+L D
Sbjct: 236 LLPLQSITAACESILKD 252


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 212 RQENRCLRPLSSVTSYCKSLLSD--VRVEPLLCIVHH 108
           R E+  L  L  +T Y   LLS   + VE  + ++HH
Sbjct: 480 RMESEQLETLEKITKYILKLLSKTVLEVEVNIEVIHH 516


>SPCC1827.06c |||aspartate semialdehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 357

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 236 HLPLLSYRRQENRCLRPLSSVTSYCKS 156
           HL ++ Y+RQEN+  R      S C +
Sbjct: 127 HLDVIKYQRQENKLDRGCIITNSNCST 153


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
 Frame = -1

Query: 329 GHVRYAAFHYCL---CDRQLVG 273
           G VR+  F YCL   C + LVG
Sbjct: 39  GDVRFGVFGYCLNSNCSKPLVG 60


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 287 DHINSNGTLRTSHDLEEDVPDRCSNEEIRN 376
           DH N N T   S + E+D  D  +++++ N
Sbjct: 95  DHKNLNNTKEISLNEEDDSDDSVNSDKLEN 124


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +3

Query: 132 FNSNVG*ERFA-IR-RYGRQRPKTAILLTTI 218
           F S++G E+F  I+ RY +  P T +L+TT+
Sbjct: 704 FASDMGMEKFFNIKCRYSKLVPNTVVLVTTV 734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,399,288
Number of Sequences: 5004
Number of extensions: 22902
Number of successful extensions: 73
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)