Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24p18
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574...    29   1.4  
01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552...    28   2.4  
04_04_0302 - 24255456-24255935,24256723-24257604                       27   5.5  
02_01_0366 - 2631738-2632109                                           27   5.5  
08_01_0903 - 8897977-8899016,8899128-8899300,8901553-8901666,890...    27   7.2  
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210...    27   7.2  
01_06_1539 + 38107108-38109649,38110563-38110915                       27   7.2  
01_07_0093 + 41045841-41045968,41046068-41046161,41046740-410469...    26   9.6  

>07_01_1133 -
           10550799-10551137,10552195-10552254,10555693-10557401,
           10557534-10557616,10577533-10578074
          Length = 910

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 5   EDSAAIVRAKSCLAASRQETVARKAARDL 91
           E+   I++ +SC+A SRQ++ A    RDL
Sbjct: 651 EEKVKIIQERSCIAQSRQKSYADNRHRDL 679


>01_05_0801 +
           25353708-25353914,25354307-25354429,25355035-25355205,
           25355303-25355392,25355497-25355583,25355664-25355719,
           25355812-25355905,25356032-25356144,25356211-25356283,
           25356603-25356683,25356865-25356951,25357031-25357135,
           25357279-25357385,25357481-25357541,25357931-25358158,
           25359720-25360677,25360816-25360997,25361237-25361326,
           25361422-25361709,25361844-25362056,25362560-25362784
          Length = 1212

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 284 GDHINSNGTLRTSHDLEED 340
           GDH+  NG L+T +DLE +
Sbjct: 809 GDHLRKNGDLKTINDLENE 827


>04_04_0302 - 24255456-24255935,24256723-24257604
          Length = 453

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -1

Query: 194 LRPLSSVTSYCKSLLSDVRVEPLL 123
           LR + SV   CK+L S VR EPLL
Sbjct: 213 LRDILSVERVCKTLHSAVRNEPLL 236


>02_01_0366 - 2631738-2632109
          Length = 123

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -1

Query: 287 RQLVGQMVLMLVRHRLAHLPLLSYRRQENRCLRPLSSVTSYCKSLLSDVRVEPLLCIV 114
           R+  G++ L+L  H    L  +S R      + PLS+ +S       +  + PLLC+V
Sbjct: 63  RREKGEVALVLSCHHRLRLDPMSPRTVWASSVAPLSASSSAASGPNEEAVMPPLLCLV 120


>08_01_0903 -
           8897977-8899016,8899128-8899300,8901553-8901666,
           8901743-8901836,8901925-8902103,8902165-8902496,
           8913058-8913306
          Length = 726

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 62  TVARKAARDLFASLSNGEQYITTVQLER 145
           T A KA +  FA   NG + ITT Q+++
Sbjct: 334 TTAWKAIKCAFADNKNGSRIITTAQIDK 361


>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
            20921184-20921263,20922759-20922875,20923089-20923136,
            20923509-20923601,20923881-20923958,20924114-20924218,
            20924543-20925212,20925253-20925350,20925887-20925963,
            20926035-20926117,20926208-20926287,20927060-20927139,
            20927698-20927743,20928709-20929181,20929234-20929579
          Length = 2139

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 185  LSSVTSYCKSLLSDVRVEPLLCIVHHSTNWQI 90
            LSS   +C+ +   V V PL C+  ++T W I
Sbjct: 2048 LSSPFHHCRPIQEGVLVLPLRCLSMNTTVWDI 2079


>01_06_1539 + 38107108-38109649,38110563-38110915
          Length = 964

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 272 DLQAGDHINSNGTLRTSHDLEEDVPDRCSNEEIRNLTVDNL 394
           D+++GD  +S   L + H      P     EEI NL VDNL
Sbjct: 650 DIESGDDSDSKWVLESFH------PPELDPEEICNLDVDNL 684


>01_07_0093 +
           41045841-41045968,41046068-41046161,41046740-41046925,
           41047035-41047082,41047158-41047343,41047430-41047516,
           41048059-41048145,41048231-41048317
          Length = 300

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 290 HINSNGTLRTSHDLEEDVPDRCSNEEIRNLTVDN 391
           HI     L+T   +E+D+ DRCS      LT+DN
Sbjct: 261 HIGGQVLLQTYKTVEDDLLDRCS-----RLTIDN 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,244,779
Number of Sequences: 37544
Number of extensions: 154481
Number of successful extensions: 390
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)