Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24p16
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    29   0.56 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    28   1.3  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    27   2.3  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    27   2.3  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    27   3.0  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    26   5.2  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   5.2  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   5.2  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    25   6.9  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   9.1  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   9.1  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    25   9.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   9.1  

>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +1

Query: 130 WTNGYAASSIDT--HVLQGIKCRQEKPTDLRYQTQNTFNVGNIINKCSENKRYKSNNVMK 303
           W  G   S++ T  H ++ ++C  +K       +  +F V  ++ KC  + R +S     
Sbjct: 54  WKQGLCDSNVPTQEHAVKSLRCFLDKSRQKGVNSAKSFVVAPLLEKCLPSPR-QSIRDAS 112

Query: 304 HKKLSSKMKASSFSY 348
           H+ L    K+ +  Y
Sbjct: 113 HQALLILAKSDALDY 127


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = +1

Query: 196 EKPTDLRYQTQNTFNVGNIINKCSENK------RYKSNNVMKHKKLSSKMKASSFS 345
           E PT L  Q +N+F+  N+ +   E++      R   N +M  K+ +   K SS S
Sbjct: 56  ESPTSLNRQHRNSFSFNNVSSPSLEDERLINFPRVNPNRLMTSKRPNELFKTSSMS 111


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
 Frame = +1

Query: 100 NTENTYIDNHWTNGYAASSIDTHVLQGIKCRQEKPTDLRYQTQNTFNVG-NIINKC---- 264
           N EN       +N      I    L    C+  KPT+L  QT +  +   N+++ C    
Sbjct: 21  NKENCTDAVSSSNKEGPKQISEDQLSNFLCKILKPTNLTPQTYSLESKSSNLVSDCELKI 80

Query: 265 -SENKRYKSN-NVMKHKKLSSKM-------KASSFSYRAPKCSMRIAELAI 390
            S  + Y S  NV  H    SK        K    S +APKCS+  + L I
Sbjct: 81  SSVYQSYSSTFNVSNHVPSISKTVNIRETSKHLKHSTKAPKCSLPTSALEI 131


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 527 LKLRIASGIRTIGYSSITYFLKRSTAKMDSL 435
           L L +  G+  + YS+  + LKR TA MD L
Sbjct: 218 LSLPVQFGVGRVYYSAAYHALKRGTANMDVL 248


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 301 KHKKLSSKMKASSFSYRAPKCSMRIAELAIPAKRRCLETWRENYDKLS 444
           K K +SS  + SSFS R    SM++ E +  A    L+     Y KLS
Sbjct: 643 KSKNISSS-RLSSFSKRLAIASMQLPEHSASADLALLKKLLSRYSKLS 689


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 397 KRRCLETWRENYDKLSIFAVERLRKYVMDEY 489
           KRR    WRE+++K   + +E ++KY   E+
Sbjct: 125 KRRYAHEWRESWEKAD-YIMEAMKKYPHAEW 154


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 88  GDSYNTENTYIDNHWTNGY 144
           G +Y   N Y D  W NG+
Sbjct: 137 GKTYGNINVYFDEEWLNGF 155


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 312 FLVLHYIITFISFVFRTFVYYITNVESVLSLIPQVCRFFLSTFNSL 175
           F+ L+ ++TFI  +F TF+    + E VLS        F+S  ++L
Sbjct: 431 FIFLYLMLTFIGIIFSTFM-TSEDAELVLSYDLMSKSLFISVVSTL 475


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 452 RWNV*GNM*WTSIQ*CVSQMRFVV 523
           RWN   N   TS   C+SQ RFVV
Sbjct: 348 RWNSIANKLGTSPAACMSQWRFVV 371


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 82  NFGDSYNTENTYIDNHWTNGYAASSID 162
           ++GD Y     +   HW NG   + +D
Sbjct: 364 DYGDQYLPTGQFCGGHWENGIKRAYLD 390


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 460 RLRKYVMDEYPIVRI--PDAIRSFKHASSLKR 549
           ++RKY   E  I+ +  PDA R ++  SSLKR
Sbjct: 210 KVRKYGTSEKFILSVFHPDAARLYRLCSSLKR 241


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 265 SENKRYKSNNVMKHKKLSSK 324
           S NK++ ++ V+KH  LSSK
Sbjct: 121 SNNKKFDTSIVLKHTHLSSK 140


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 258 VYYITNVESVLSLIPQVCRFFLSTFNSLQNMCIN*TS 148
           +YY  +       +  +  F + TFNS + +CIN T+
Sbjct: 443 MYYSQSEHDGFIGVLDIAGFEIFTFNSFEQLCINFTN 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,697,668
Number of Sequences: 5004
Number of extensions: 58065
Number of successful extensions: 173
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)