Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24p16
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0074 - 561304-562131,562219-562425,563034-563084,563310-56... 32 0.44
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 31 0.77
02_05_0259 - 27226378-27226398,27226643-27226813,27227063-272272... 30 1.8
04_04_0392 + 24891478-24891612,24891875-24893092 28 5.4
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700... 28 7.1
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965... 27 9.4
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 27 9.4
>01_01_0074 -
561304-562131,562219-562425,563034-563084,563310-563408,
564476-564622,564750-564851,565713-565928,566061-566192,
566249-566310,567618-567746,568426-568567,568735-568830,
568924-569000,569070-569148,569229-569297,569589-569703,
570614-570777,570847-571002
Length = 956
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 208 DLRYQTQNTFNVGNIINKCSENKRYKSNNVMKHKKLSSKMKASSFSYRAPKCSMRIA-EL 384
DL + +T + IN+CSE +N+++ + S K ++++ P+ ++++ L
Sbjct: 267 DLYIRELDTLSFELSINRCSEKLANLANDILLKESASEDQKTNTWNQTGPQNNLKLQHSL 326
Query: 385 AIPAK 399
A+PA+
Sbjct: 327 ALPAQ 331
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 31.1 bits (67), Expect = 0.77
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +1
Query: 76 DYNFGDSYNTENTYIDNHWTNGYAASSIDT 165
D D NT Y DNH +NG S DT
Sbjct: 490 DSRLSDDLNTTTVYSDNHGSNGGGTQSFDT 519
>02_05_0259 -
27226378-27226398,27226643-27226813,27227063-27227284,
27227508-27227668,27227933-27227996,27228002-27228194,
27228499-27228587,27228668-27228852,27229671-27229779,
27229880-27229936,27230023-27230175
Length = 474
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 457 ERLRKYVMDEYPIVRIPDAIRSFKHASSLKRSYR-RKHCNKTKPIKNSQKNKTKL 618
+R R+ V EY RIP + FK S ++ YR ++C +T+ + NS N K+
Sbjct: 406 KRHRRDVRSEYCKCRIPQIVPCFKGPSVIEFLYRSARYCTRTQ-VHNSLCNFVKV 459
>04_04_0392 + 24891478-24891612,24891875-24893092
Length = 450
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 556 GKTSSTNWRA*NYESHLGYALLDTRPS 476
GK S++ R+ YE+ LGY++ D RP+
Sbjct: 6 GKKKSSSSRSLMYEAPLGYSIEDVRPA 32
>03_03_0090 +
14367033-14367279,14367402-14368205,14368314-14370039,
14370135-14370219,14370398-14370457,14370744-14370836
Length = 1004
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 253 INKCSENKRYKSNNVMKHKKLSSKMKASSFSYRAPKCS 366
++KCS+NK ++ ++K L + S S KCS
Sbjct: 186 VSKCSQNKSLDASKCSQNKSLDGSKCSQSKSLDGSKCS 223
>03_02_0584 -
9650996-9651488,9651630-9652049,9652129-9652158,
9652201-9652287,9652657-9653669,9653832-9654854,
9654946-9654969
Length = 1029
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +1
Query: 82 NFGDSYNTENTYIDN-HWTNGYAASSIDTHVLQGIKCRQEKPTDLRYQTQNTFNVGNIIN 258
+ G N + + N H + + ID + K K + QN+ GN++N
Sbjct: 589 SMGSGRNLQKEHDSNTHQNCSFVTNKIDMQGISDDKRINVKDGVFPHSCQNSHQSGNVVN 648
Query: 259 KCSENKR 279
+ S+NK+
Sbjct: 649 EESKNKQ 655
>02_03_0141 - 15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = -2
Query: 496 LLDTRPSHISLNVPP----QKWTACRNFLSKFQDI 404
L DT+ S L+ P QKW C NF+ +DI
Sbjct: 1440 LFDTKSSREKLHAKPIEILQKWKRCPNFIQYTRDI 1474
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,853,369
Number of Sequences: 37544
Number of extensions: 313324
Number of successful extensions: 841
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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