Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24p15
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    28   1.3  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    26   5.1  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    25   6.7  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   8.9  

>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +3

Query: 537 GTSYRARGHKGKL--CAHRRSKFLL 605
           G SY+AR H GKL  CAH   +F +
Sbjct: 110 GFSYKAREHTGKLDFCAHCNCRFTI 134


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +2

Query: 203 SVTSSGVS--ENIACGSMTTDEEEID 274
           S +SSG S   +I CGS  T++EE+D
Sbjct: 29  SGSSSGASLLVDIMCGSKETEDEEVD 54


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 312 STELTLEVALPTGSISSSSVVMLPQAIFSLTPEDVTENRLSSKLY 178
           + ++TL+  + TG +++   V+    I+     + TEN  S +LY
Sbjct: 48  TNKITLDNPVYTGFLNTQGRVLFDSFIYPKVSNNGTENERSDELY 92


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 302 NSVDP-GQFATKIDQRYGGQYLTPDQLPEFCAQL 400
           N +DP  Q    ++ R GG Y+ P +L    AQL
Sbjct: 74  NELDPKAQIKKLMETRSGGTYIPPAKLKALQAQL 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,743
Number of Sequences: 5004
Number of extensions: 44826
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)