Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24p12
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 325 1e-89
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 323 4e-89
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 323 4e-89
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 323 4e-89
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 323 4e-89
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 323 4e-89
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 323 4e-89
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 323 4e-89
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 310 4e-85
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 284 2e-77
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 230 5e-61
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 191 3e-49
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 188 2e-48
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 186 6e-48
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 186 6e-48
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 182 1e-46
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 151 4e-37
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 126 1e-29
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 93 1e-19
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 50 1e-06
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 50 1e-06
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 32 0.22
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 31 0.38
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 30 1.2
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 1.5
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 4.7
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 28 4.7
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 6.2
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 6.2
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 6.2
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 6.2
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 6.2
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical pr... 27 8.1
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 325 bits (798), Expect = 1e-89
Identities = 149/151 (98%), Positives = 151/151 (100%)
Frame = +2
Query: 68 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 248 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 427
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 428 TQIMFETFNSPAMYVAIQAVLSLYASGRTTG 520
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTG 151
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 323 bits (794), Expect = 4e-89
Identities = 148/151 (98%), Positives = 151/151 (100%)
Frame = +2
Query: 68 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 248 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 427
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 428 TQIMFETFNSPAMYVAIQAVLSLYASGRTTG 520
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTG 151
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 323 bits (794), Expect = 4e-89
Identities = 148/151 (98%), Positives = 151/151 (100%)
Frame = +2
Query: 68 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 248 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 427
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 428 TQIMFETFNSPAMYVAIQAVLSLYASGRTTG 520
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTG 151
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 323 bits (794), Expect = 4e-89
Identities = 148/151 (98%), Positives = 151/151 (100%)
Frame = +2
Query: 68 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 248 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 427
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 428 TQIMFETFNSPAMYVAIQAVLSLYASGRTTG 520
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTG 151
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 323 bits (794), Expect = 4e-89
Identities = 148/151 (98%), Positives = 151/151 (100%)
Frame = +2
Query: 68 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 248 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 427
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 428 TQIMFETFNSPAMYVAIQAVLSLYASGRTTG 520
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTG 151
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 323 bits (794), Expect = 4e-89
Identities = 147/151 (97%), Positives = 151/151 (100%)
Frame = +2
Query: 68 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
MCDDDVAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 248 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 427
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 428 TQIMFETFNSPAMYVAIQAVLSLYASGRTTG 520
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTG 151
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 323 bits (794), Expect = 4e-89
Identities = 148/151 (98%), Positives = 151/151 (100%)
Frame = +2
Query: 68 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 248 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 427
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 428 TQIMFETFNSPAMYVAIQAVLSLYASGRTTG 520
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTG 151
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 323 bits (794), Expect = 4e-89
Identities = 148/151 (98%), Positives = 151/151 (100%)
Frame = +2
Query: 68 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 248 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 427
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 428 TQIMFETFNSPAMYVAIQAVLSLYASGRTTG 520
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTG 151
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 310 bits (761), Expect = 4e-85
Identities = 140/149 (93%), Positives = 148/149 (99%)
Frame = +2
Query: 74 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 253
++++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 254 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 433
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKSNREKMTQ 121
Query: 434 IMFETFNSPAMYVAIQAVLSLYASGRTTG 520
IMFETFN+PAMYV IQAVLSLYASGRTTG
Sbjct: 122 IMFETFNTPAMYVNIQAVLSLYASGRTTG 150
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 284 bits (697), Expect = 2e-77
Identities = 130/133 (97%), Positives = 133/133 (100%)
Frame = +2
Query: 122 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIIT 301
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 302 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 481
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQ
Sbjct: 65 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 124
Query: 482 AVLSLYASGRTTG 520
AVLSLYASGRTTG
Sbjct: 125 AVLSLYASGRTTG 137
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 230 bits (562), Expect = 5e-61
Identities = 105/107 (98%), Positives = 107/107 (100%)
Frame = +2
Query: 200 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 379
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 60
Query: 380 LLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTG 520
LLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG
Sbjct: 61 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 107
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 191 bits (465), Expect = 3e-49
Identities = 86/153 (56%), Positives = 116/153 (75%), Gaps = 4/153 (2%)
Frame = +2
Query: 74 DDDVAA---LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 244
D DV A +V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKA 61
Query: 245 QSKRGILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANRE 421
+S RG+ +++YP+EHGI+ NW DMEKIW + F ++L++ PEEHPVLLT+APLNP NRE
Sbjct: 62 ESNRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRE 121
Query: 422 KMTQIMFETFNSPAMYVAIQAVLSLYASGRTTG 520
+ +I FETFN PA+Y+ +QAVLSLYA+GRTTG
Sbjct: 122 RSAEIFFETFNVPALYIQMQAVLSLYATGRTTG 154
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 188 bits (458), Expect = 2e-48
Identities = 85/86 (98%), Positives = 86/86 (100%)
Frame = +2
Query: 68 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 248 SKRGILTLKYPIEHGIITNWDDMEKI 325
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 186 bits (454), Expect = 6e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +2
Query: 68 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 248 SKRGILTLKYPIEHGIITNWDDMEKI 325
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 186 bits (454), Expect = 6e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +2
Query: 68 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 248 SKRGILTLKYPIEHGIITNWDDMEKI 325
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 182 bits (444), Expect = 1e-46
Identities = 82/83 (98%), Positives = 83/83 (100%)
Frame = +2
Query: 68 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 248 SKRGILTLKYPIEHGIITNWDDM 316
SKRGILTLKYPIEHGI+TNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 151 bits (365), Expect = 4e-37
Identities = 74/146 (50%), Positives = 100/146 (68%), Gaps = 3/146 (2%)
Frame = +2
Query: 92 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM-VGMGQ-KDSYVGDEAQSKRGIL 265
+VVDNG+G K G+AG + P +FPS+VGRP + VG + KD VG+E R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 266 TLKYPIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMF 442
+ YP+++GI+ NWDDM +W HTF E L + P+E +LLTE PLNP +NREKM Q+MF
Sbjct: 69 DINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKMFQVMF 128
Query: 443 ETFNSPAMYVAIQAVLSLYASGRTTG 520
E + ++YVA+QAVL+LYA G TG
Sbjct: 129 EQYGFNSIYVAVQAVLTLYAQGLLTG 154
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 126 bits (303), Expect = 1e-29
Identities = 68/159 (42%), Positives = 90/159 (56%), Gaps = 13/159 (8%)
Frame = +2
Query: 68 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI------VGRPRHQG------VMVGM 211
M + A V+DNG+G K G+AG+ P+ + PS V Q V G+
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 212 GQKDSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 388
D ++GDEA S T+KYPI HGI+ +WD ME+ W + LR PE+H LLT
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLT 120
Query: 389 EAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYAS 505
E PLN NRE +IMFE+FN P +Y+A+QAVL+L AS
Sbjct: 121 EPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTAS 159
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 93.1 bits (221), Expect = 1e-19
Identities = 60/165 (36%), Positives = 86/165 (52%), Gaps = 17/165 (10%)
Frame = +2
Query: 77 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA--QS 250
D+V+ LV D GS + GFAG++ P+ PS + Q+ GD + Q+
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEGDNSKVQT 68
Query: 251 KR------GILTLKYP---------IEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 385
KR G + P ++ G+I +W+ EKI H++ N L P EHPVL
Sbjct: 69 KREKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLF 128
Query: 386 TEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTG 520
+E+ N +A REK+T+IMFE F PA Y++ VLS +A GRT G
Sbjct: 129 SESSWNDRARREKLTEIMFEKFQVPAYYLSKNVVLSCFAQGRTHG 173
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 49.6 bits (113), Expect = 1e-06
Identities = 33/123 (26%), Positives = 58/123 (47%)
Frame = +2
Query: 83 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 262
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 263 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 442
++ PIE G + NWD ++IW TF + V + LT+ A + ++I+F
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILF 115
Query: 443 ETF 451
+ F
Sbjct: 116 DYF 118
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 49.6 bits (113), Expect = 1e-06
Identities = 33/123 (26%), Positives = 58/123 (47%)
Frame = +2
Query: 83 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 262
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 263 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 442
++ PIE G + NWD ++IW TF + V + LT+ A + ++I+F
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILF 115
Query: 443 ETF 451
+ F
Sbjct: 116 DYF 118
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 32.3 bits (70), Expect = 0.22
Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 2/145 (1%)
Frame = +2
Query: 92 LVVDNGSGMCKAGFAGDDA--PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 265
L+++ GS +AG + P++ FP+I R + VG + R I
Sbjct: 181 LILELGSCSIRAGVLTTEPSLPQSFFPAIAVRTDDGKIFVGEDAYRPEIRHNGDFVRPIS 240
Query: 266 TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 445
+E I D+ K EL+V P ++ VLL+ P ++ QI E
Sbjct: 241 ATDPSVERYSIDK--DVLKAVIGKVTKELKVEPWKYKVLLSIPQNIPTVLIGELLQICLE 298
Query: 446 TFNSPAMYVAIQAVLSLYASGRTTG 520
+ + Q L LYA TTG
Sbjct: 299 DIKFQSAGITRQPSLILYAYDVTTG 323
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 31.5 bits (68), Expect = 0.38
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 99 STMAPACARPVSPATTRPAPSSRP 170
+T AP PATTRPAP+S+P
Sbjct: 317 ATRAPPATTRAPPATTRPAPASQP 340
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +3
Query: 90 RL*STMAPACARPVSPATTRPAPSSRPSWVALATRA 197
RL S +AP A P S A TR APS + VA RA
Sbjct: 231 RLSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRA 266
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 213 PIPTITPWWRGRPTMDGKTARGASSPAKPALHMPEPL 103
P T TP RGRP + ++ P P P+PL
Sbjct: 336 PPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPL 372
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 122 KAGFAGDDAPRAVFPSIVGRPRHQG 196
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +3
Query: 99 STMAPACARPVSPATTRPAPSSRPSWVALATRA 197
S +AP A P S A TR APS + VA RA
Sbjct: 238 SAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRA 270
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 263 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 180
GY GP P + GP P PG EG
Sbjct: 387 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 414
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 263 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 180
GY GP P + GP P PG EG
Sbjct: 386 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 413
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 263 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 180
GY GP P + GP P PG EG
Sbjct: 386 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 413
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 263 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 180
GY GP P + GP P PG EG
Sbjct: 387 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 414
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 263 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 180
GY GP P + GP P PG EG
Sbjct: 423 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 450
>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
protein F29G6.3c protein.
Length = 1453
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -2
Query: 367 LGGDTQLIVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSLALGLV--THVGVFLAHTDH 200
L G Q +V +VP +H+ +D++ L S+A+G V +H GV + H H
Sbjct: 215 LHGRDQSVVSSIVPASVHIQSDSEDSIAPSKLTH---SIAVGGVVDSHNGVNVLHRSH 269
>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
protein F29G6.3b protein.
Length = 1785
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -2
Query: 367 LGGDTQLIVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSLALGLV--THVGVFLAHTDH 200
L G Q +V +VP +H+ +D++ L S+A+G V +H GV + H H
Sbjct: 215 LHGRDQSVVSSIVPASVHIQSDSEDSIAPSKLTH---SIAVGGVVDSHNGVNVLHRSH 269
>Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical
protein F29G6.3a protein.
Length = 772
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -2
Query: 367 LGGDTQLIVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSLALGLV--THVGVFLAHTDH 200
L G Q +V +VP +H+ +D++ L S+A+G V +H GV + H H
Sbjct: 215 LHGRDQSVVSSIVPASVHIQSDSEDSIAPSKLTH---SIAVGGVVDSHNGVNVLHRSH 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,277,185
Number of Sequences: 27780
Number of extensions: 244683
Number of successful extensions: 1180
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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