Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24p08
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1004 - 23461798-23462024,23462340-23462415,23463479-234636...    29   4.1  
04_01_0305 - 4141692-4142912                                           28   7.1  

>08_02_1004 -
           23461798-23462024,23462340-23462415,23463479-23463610,
           23463927-23464004,23464919-23465320
          Length = 304

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 484 GLKYSYNGCPQPSNRNALLLHGRNRQ--GGG 398
           GLKY   G  +P    A L H RNRQ  GGG
Sbjct: 177 GLKYEDAGKEKPEAYRAFLSHKRNRQIPGGG 207


>04_01_0305 - 4141692-4142912
          Length = 406

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +2

Query: 557 IKWVVSSSTHLSNKKKNIKSALKEL 631
           ++W+V+ +T LSN+K  ++S ++ L
Sbjct: 66  VRWLVNENTELSNEKSYLESRVRRL 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,044,106
Number of Sequences: 37544
Number of extensions: 318128
Number of successful extensions: 579
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)