Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24p08
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000261-7|AAB52927.2|  340|Caenorhabditis elegans Serpentine re...    28   4.8  
U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>AF000261-7|AAB52927.2|  340|Caenorhabditis elegans Serpentine
           receptor, class x protein98 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 45  VDVFEIFINVLMLFNWVHSLLSNFQRLEDS*TQNLKHFLYFECVYMYVYQISI-NLQYES 221
           +  F IFIN+L+L  ++   +S+F  L  S T +    L+  C  +Y   +S+  + Y  
Sbjct: 63  LSAFGIFINILVLHRFIAKNMSSFYLLCSSKTVSNSIILF--CYLVYNGPVSVLQVYYGP 120

Query: 222 VVYTVIITR*TSY 260
            ++ ++  +  +Y
Sbjct: 121 EMFNILFNQIAAY 133


>U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical
           protein T22F7.5 protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 341 YTCIHFTGGRTLCDAARVGTTTLPI 415
           Y+C +  GG+T+C  AR+G    P+
Sbjct: 97  YSCQNSKGGKTICCTARIGGRDRPM 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,459,793
Number of Sequences: 27780
Number of extensions: 304724
Number of successful extensions: 561
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)