Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24p08
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   2.5  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   2.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.7  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 324 YSIYIDTHAYILLVVGPYV 380
           YS+ +     I LVVGPYV
Sbjct: 12  YSVAMSQRLCIQLVVGPYV 30


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 324 YSIYIDTHAYILLVVGPYV 380
           YS+ +     I LVVGPYV
Sbjct: 11  YSVAMSQRLCIQLVVGPYV 29


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 255 SYVKNVIINIIMCTL*ISSDLRRYS 329
           SYVK + I ++MC + + + L  Y+
Sbjct: 299 SYVKAIDIYLVMCFVFVFAALLEYA 323



 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 360 VKCMHVYLCKCYIYV 316
           VK + +YL  C+++V
Sbjct: 301 VKAIDIYLVMCFVFV 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,422
Number of Sequences: 438
Number of extensions: 4189
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)