Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24o24
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    28   0.83 
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   4.4  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    25   7.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.7  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   7.7  

>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +1

Query: 355 VFVIKLRSIQFSQYSVFRIFVDKTKEIAFSYKNAHCTIIGTCLL 486
           VF+  +  I + +   F +FV K     F  K   C  +  C L
Sbjct: 54  VFIFGMECIVYEKNKEFIVFVSKADSTGFGSKGVSCNSLAFCCL 97


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 440  KAISFVLSTKILKTEYWLN 384
            K++SFV ST  + TEY++N
Sbjct: 1133 KSLSFVSSTSTVDTEYYVN 1151


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +1

Query: 415 VDKTKEIAFSYKNAH 459
           ++++KEI+FSYK+ H
Sbjct: 220 IEESKEISFSYKDEH 234


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 72   YKNRFHTATFEKHNKNNKSHNY 137
            +KN F+T  F KH  N+    Y
Sbjct: 1090 FKNSFYTVKFNKHGNNDLGKFY 1111


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 346 KSIVFVIKLRSIQFSQYSV--FRIFVDKTKEIAFSYKNAH 459
           KSI ++ K  S   S  S+  FRIFV ++   AF+  N H
Sbjct: 592 KSIKYLFKRVSETLSTASLECFRIFVYRSALFAFNKSNVH 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,339
Number of Sequences: 5004
Number of extensions: 41083
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)