Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24o23
         (295 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0545 + 24839536-24843421,24843871-24844310                       27   2.6  
06_03_0806 + 24788441-24789049                                         26   4.6  
01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245     26   6.1  

>11_06_0545 + 24839536-24843421,24843871-24844310
          Length = 1441

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 104  CNNVFSIKCTTVANVDLCMINKMFNKYKN 190
            CN VF +K  ++ N D+  + K  NK ++
Sbjct: 959  CNRVFQLKYLSLRNTDIAELPKEINKLQD 987


>06_03_0806 + 24788441-24789049
          Length = 202

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 255 YVLRELYEECYYLHLAFCNIYSFLYLLNILFI 160
           Y+   L    YYL +   +IY  +YLL+I+++
Sbjct: 163 YISIYLLSIIYYLSIYLLSIYLSIYLLSIIYL 194


>01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245
          Length = 686

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 261 FLYVLRELYEECYYLHLAFCNIYSFLYLLNILF 163
           FL+V   +    +++ LA     SF+YLL ++F
Sbjct: 336 FLHVSPVVNHVLWWISLALMGFVSFIYLLKVVF 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,105,979
Number of Sequences: 37544
Number of extensions: 70541
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)