Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24o22
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    28   0.62 
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    25   4.4  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   5.8  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   5.8  
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    25   7.7  

>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
 Frame = +3

Query: 174 VLATQAFGFDERELLKENKAFRELEEMAAANIXRSAF------GGLLRRSTTYRTSVTCR 335
           V+A +A       L++ N   REL  + AANI  S F      GG LR      +    +
Sbjct: 348 VIAVKAISLQTNNLIRSN---RELISLGAANIGSSLFCGLPICGGYLRTKCNIMSGARTQ 404

Query: 336 LSTVA 350
           ++T+A
Sbjct: 405 VATIA 409


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 150 HQTPIVLKVLATQA--FGFDERELLKENKAFRELEEMAAANIXRSAFGGLLRRST 308
           H+TP + KVL TQ+      E  LL  N  FR+L  + A  +  +    +L + T
Sbjct: 363 HKTPSLRKVLTTQSERDQMVEMGLLASNFRFRQLSIVPARQMFLAFGARILMKGT 417


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 16/75 (21%), Positives = 27/75 (36%)
 Frame = +1

Query: 229 KHFVSLKKWLLRIFXEVLSXVYYGDQQRIERP*HVVFRPLRCSKSSAQLKPLSKYTKVRP 408
           KH V  + W      EVL  + Y D        H  F P+    +  +    ++      
Sbjct: 164 KHIVDARMWTEAYMSEVLRSLLYSDDTNSRFAGHRRFNPIPNPDAELRFFEAAEQLFTLG 223

Query: 409 FRMGTRNXVSASTAV 453
           + +G+ + V   T V
Sbjct: 224 YTLGSSSEVRVPTHV 238


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 422  RETWYPQVQRW 454
            +ETWY ++QRW
Sbjct: 1296 KETWYEKLQRW 1306


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 225 FLSAIL--SHRIRKPGLPKPLIQLVFDAQKPKRNFELI 118
           +L+A L  SHR+   GLP   IQL  +  K  +N  +I
Sbjct: 223 YLNAYLNTSHRVCAKGLPVAHIQLTDEEFKTYKNMPII 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,715,567
Number of Sequences: 5004
Number of extensions: 29136
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)