Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24o22
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0453 - 3471656-3471819,3472416-3472580,3473062-3473145,347...    29   1.4  
02_01_0037 + 261405-261779,261880-262065,262185-262271,262341-26...    27   5.8  

>03_01_0453 -
           3471656-3471819,3472416-3472580,3473062-3473145,
           3473304-3473375,3473496-3473574,3473894-3473990,
           3474064-3474116,3474257-3474386,3474464-3474498,
           3476108-3476212,3476759-3476833,3477671-3477799,
           3477918-3478097,3478737-3478820,3478943-3479059,
           3479170-3479242,3479316-3479437,3479519-3479641,
           3479917-3479989,3480218-3480396,3480699-3480837,
           3481105-3481259,3481570-3481875
          Length = 912

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 346 LRCSKSSAQLKPLSKYTKVRPFRMGTRNXVSASTAVALPSP 468
           L+ SK  A++K + K+  + PF     N +    +VALP P
Sbjct: 154 LKISKLEAEVKQIYKFPLILPFFQHQENKMLLFLSVALPQP 194


>02_01_0037 +
           261405-261779,261880-262065,262185-262271,262341-262420,
           262518-262599,262794-262814,263204-263249,263365-263483,
           263685-263798,263885-263959,264068-264157,264604-264713,
           264902-265160
          Length = 547

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +3

Query: 216 LKENKAFRELEEMAAANIXRSAFGGLLRRSTTYRTSVTCRLSTVALQQKFSTIKAAV 386
           +++ K  R++  + +AN+ +SAF   + R+  Y+  V       A  QK+  I++AV
Sbjct: 265 IQQEKKGRDVYILGSANVGKSAFISAMLRTMAYKDPV------AAAAQKYKPIQSAV 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,809,882
Number of Sequences: 37544
Number of extensions: 176741
Number of successful extensions: 343
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)