Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24o15
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans chrom...    41   6e-04
Z36753-7|CAA85339.1|  339|Caenorhabditis elegans Hypothetical pr...    41   8e-04
Z92803-4|CAB54267.2|  303|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z92803-3|CAB07243.2|  301|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z92803-2|CAB07241.1|  175|Caenorhabditis elegans Hypothetical pr...    40   0.001
AF123574-1|AAD21197.1|  175|Caenorhabditis elegans chromo-domain...    40   0.001
AF123573-1|AAD21196.1|  301|Caenorhabditis elegans chromo-domain...    40   0.001
Z70210-6|CAA94152.1|  184|Caenorhabditis elegans Hypothetical pr...    38   0.004
U61944-4|AAB03120.1|  891|Caenorhabditis elegans Hypothetical pr...    38   0.004
AF056580-1|AAC78602.1|  184|Caenorhabditis elegans heterochromat...    38   0.004
U41992-6|AAA83357.1|  270|Caenorhabditis elegans Hypothetical pr...    34   0.068
U23169-4|AAC46697.1|  706|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern...    29   2.6  
AF039049-3|AAB94251.2|  298|Caenorhabditis elegans Serpentine re...    29   3.4  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   4.5  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   4.5  
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.      28   5.9  
Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.    27   7.8  
AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.    27   7.8  
AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cel...    27   7.8  

>L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans
           chromodomain proteinprotein 1 protein.
          Length = 304

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +2

Query: 302 ILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELI 418
           IL+ +K KGK  + I+W GY    ++WEP++ +  P LI
Sbjct: 13  ILEHRKKKGKSEFYIKWLGYDHTHNSWEPKENIVDPTLI 51


>Z36753-7|CAA85339.1|  339|Caenorhabditis elegans Hypothetical
           protein T09A5.8 protein.
          Length = 339

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = +2

Query: 299 KILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTL 400
           KIL  K     L   +RW GY AD DTWEPE+ L
Sbjct: 28  KILAHKVTDNLLVLQVRWLGYGADEDTWEPEEDL 61


>Z92803-4|CAB54267.2|  303|Caenorhabditis elegans Hypothetical
           protein K01G5.2c protein.
          Length = 303

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 299 KILDSKKIK-GKLHYLIRWKGYSADSDTWEPEQTLSCPELI 418
           K+LD +  K G+  +LI+W+G+     +WEP + L C E++
Sbjct: 23  KVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEML 63


>Z92803-3|CAB07243.2|  301|Caenorhabditis elegans Hypothetical
           protein K01G5.2b protein.
          Length = 301

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 299 KILDSKKIK-GKLHYLIRWKGYSADSDTWEPEQTLSCPELI 418
           K+LD +  K G+  +LI+W+G+     +WEP + L C E++
Sbjct: 23  KVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEML 63


>Z92803-2|CAB07241.1|  175|Caenorhabditis elegans Hypothetical
           protein K01G5.2a protein.
          Length = 175

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 299 KILDSKKIK-GKLHYLIRWKGYSADSDTWEPEQTLSCPELI 418
           K+LD +  K G+  +LI+W+G+     +WEP + L C E++
Sbjct: 23  KVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEML 63


>AF123574-1|AAD21197.1|  175|Caenorhabditis elegans chromo-domain
           protein protein.
          Length = 175

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 299 KILDSKKIK-GKLHYLIRWKGYSADSDTWEPEQTLSCPELI 418
           K+LD +  K G+  +LI+W+G+     +WEP + L C E++
Sbjct: 23  KVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEML 63


>AF123573-1|AAD21196.1|  301|Caenorhabditis elegans chromo-domain
           protein protein.
          Length = 301

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 299 KILDSKKIK-GKLHYLIRWKGYSADSDTWEPEQTLSCPELI 418
           K+LD +  K G+  +LI+W+G+     +WEP + L C E++
Sbjct: 23  KVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEML 63


>Z70210-6|CAA94152.1|  184|Caenorhabditis elegans Hypothetical
           protein K08H2.6 protein.
          Length = 184

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 299 KILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELI 418
           K+L+ +  +G   Y I+W+G+     +WEP + L C  +I
Sbjct: 41  KVLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMI 80


>U61944-4|AAB03120.1|  891|Caenorhabditis elegans Hypothetical
           protein T12E12.2 protein.
          Length = 891

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 314 KKIKGKLHYLIRWKGYSADSDTWEPEQTL-SCPEL 415
           K+   K  YL+ W+GY     TWEPE+ L +C EL
Sbjct: 43  KRRHSKYAYLVHWRGYDWKERTWEPEENLENCEEL 77


>AF056580-1|AAC78602.1|  184|Caenorhabditis elegans heterochromatin
           protein 1 homolog protein.
          Length = 184

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 299 KILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLSCPELI 418
           K+L+ +  +G   Y I+W+G+     +WEP + L C  +I
Sbjct: 41  KVLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMI 80


>U41992-6|AAA83357.1|  270|Caenorhabditis elegans Hypothetical
           protein F32E10.2 protein.
          Length = 270

 Score = 34.3 bits (75), Expect = 0.068
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = +2

Query: 299 KILDSKKIKGKLHYLIRWKGYSA---DSDTWEPEQTLSCPELI 418
           ++L  +K+KG   YL++WKGY     +S+ WE E   +C +L+
Sbjct: 91  RVLAHRKVKGSPLYLVQWKGYPHPVWNSEMWE-EDLDNCKDLL 132


>U23169-4|AAC46697.1|  706|Caenorhabditis elegans Hypothetical
           protein C29H12.5 protein.
          Length = 706

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 338 YLIRWKGYSADSDTWEPEQTL 400
           +L++W GY     TWEPE  +
Sbjct: 95  FLVKWLGYGNKEMTWEPESNI 115


>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
           (werner's syndrome) relatedprotein 1 protein.
          Length = 1056

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 71  DDDVVSSTNGSLLNDDQTATENKTVESVTDESVDQNNDDF 190
           D+D +  T     +D  T T NKT   V DE  D + DDF
Sbjct: 27  DNDELPETEPESDSDKPTVTSNKTENQVADEDYD-SFDDF 65


>AF039049-3|AAB94251.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein66 protein.
          Length = 298

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 328 AFNLLRIKNFLDLIFFFNDTFVFCRFIFLC 239
           AFNL + K  + +++ F  TF  C + +LC
Sbjct: 114 AFNLSKTKYMIFILWMFELTFALCFYEYLC 143


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
           protein.
          Length = 1829

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 323 KGKLHYLIRWKGYSADSDTWEPEQT 397
           K +  YL++WK  S D  TWE + +
Sbjct: 502 KSQQDYLVKWKELSYDQATWERDDS 526


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 323 KGKLHYLIRWKGYSADSDTWEPEQT 397
           K +  YL++WK  S D  TWE + +
Sbjct: 502 KSQQDYLVKWKELSYDQATWERDDS 526


>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 323 KGKLHYLIRWKGYSADSDTWEPEQT 397
           K +  YL++WK  S +  TWE + T
Sbjct: 514 KSQQDYLVKWKELSYEHATWERDDT 538


>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 323 KGKLHYLIRWKGYSADSDTWEPEQT 397
           K +  YL++WK  S +  TWE + T
Sbjct: 514 KSQQDYLVKWKELSYEHATWERDDT 538


>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
          Length = 1787

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 323 KGKLHYLIRWKGYSADSDTWEPEQT 397
           K +  YL++WK  S +  TWE + T
Sbjct: 514 KSQQDYLVKWKELSYEHATWERDDT 538


>Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical
           protein R07B5.6 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 364 RISFPANQIM*FAFNLLRIKNFLDLIFFFNDTFVFCRFI 248
           R S PA  I+      ++  +FL+LIFFF   F +C  I
Sbjct: 83  RFSLPATGILTSWSASIQPNHFLNLIFFFTFYFNYCILI 121


>AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.
          Length = 691

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 203 WKCS-KNHHCFDRRFHQLQI 147
           W C  K+HH F  RFHQ Q+
Sbjct: 640 WPCKPKSHHKFRVRFHQAQL 659


>AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.
          Length = 728

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 203 WKCS-KNHHCFDRRFHQLQI 147
           W C  K+HH F  RFHQ Q+
Sbjct: 677 WPCKPKSHHKFRVRFHQAQL 696


>AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cell
           lineage protein 65,isoform a protein.
          Length = 728

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 203 WKCS-KNHHCFDRRFHQLQI 147
           W C  K+HH F  RFHQ Q+
Sbjct: 677 WPCKPKSHHKFRVRFHQAQL 696


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,420,749
Number of Sequences: 27780
Number of extensions: 146332
Number of successful extensions: 485
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)