Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24o08
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    52   5e-08
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    28   0.98 
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    27   1.7  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.3  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   6.9  

>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
 Frame = +1

Query: 268 IFTCYFIYGMLQEKVTRGVYGNNEKFTATLSLVLVQCTVNYIFAQILMLSWKHEKD---- 435
           I+  +  + ++QEK+    Y + E+F++   L L Q  +  +    L+ +W H       
Sbjct: 15  IYGSFLSWAVMQEKIITRPY-DGERFSSPALLSLAQSFMTVLCG--LLWNWFHGVSARGL 71

Query: 436 -NTKKIYYFSS-ALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLMLGVLLGRKSYPL 609
              K + YFSS A++  L       ++  ++YPT ++GK+ K +PV+ L V + ++ +P 
Sbjct: 72  LEPKFLGYFSSIAISASLSSYFGYASMFHLSYPTVILGKSCKLLPVIALHVFVYKRKFPP 131

Query: 610 KKYLFVFLI 636
            KYL V +I
Sbjct: 132 HKYLIVTMI 140


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 300 KHSINKVTCKNRAGIKYESKFRAALSHFC 214
           KH++N +TC  R  I Y S F A    FC
Sbjct: 224 KHNLNPLTCTGRFIIGYVSTFAAYWLGFC 252


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = -2

Query: 588 KKDTEHQDWDGF-CRFSHNLSRVVDPLQRHVRADHTQKIR*SRREVVN---FLG 439
           + +  H++   F C F +      D L RHV+  H QK   S R ++N   FLG
Sbjct: 45  RHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNLSERRMLNASCFLG 98


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 397 AQILMLSWKHEKDNTKKIYYFSSALTYLLGMVCSNMALQ 513
           A+++    + E+DN KKIY F   L+  L M+ S   LQ
Sbjct: 372 AKLICALREWEEDNEKKIYVFGKPLSSRLLMIHSPPILQ 410


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 448 IYYFSSALTYLLGMVCSNMALQWVNYPTQVVG 543
           +Y  S AL+  +G  CSN++L+ +N+   V+G
Sbjct: 61  LYLVSVALSPFIG--CSNVSLRLINWLVGVIG 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,165
Number of Sequences: 5004
Number of extensions: 56260
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)