Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24o08
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0119 + 820566-820739,822708-822737,823153-823266,823341-82... 58 6e-09
06_03_0629 + 22920206-22920291,22920430-22920527,22920657-229207... 58 8e-09
03_01_0124 + 971213-971341,971741-971769,971877-972078,972839-97... 38 0.009
12_01_0661 + 5596739-5597047,5597125-5597703 30 1.3
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304... 29 2.3
12_02_0462 - 19373358-19373702,19373836-19373979,19374105-193741... 27 9.4
07_01_0571 + 4232133-4232243,4232434-4232484,4232602-4232745,423... 27 9.4
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960... 27 9.4
>05_01_0119 +
820566-820739,822708-822737,823153-823266,823341-823433,
823521-823586,824076-824174,824480-824559,825039-825151,
825600-825688,825955-826041,826128-826130,826285-826383
Length = 348
Score = 58.0 bits (134), Expect = 6e-09
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Frame = +1
Query: 253 FYAGSIFTCYFIYGMLQ----------EKVTRGVYGNNEKFTATLSLVLVQC---TVNYI 393
F I + IYG+LQ EK+ R YG ++F SL LV C T + +
Sbjct: 42 FAVVGIMSTLLIYGLLQILINSLVLRLEKIMRVPYGAEKEFFR-YSLFLVFCNRITTSTV 100
Query: 394 FAQILMLSWKHEKDNTKKIYYFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLM 573
A +L S K Y +++ +L C AL++V++P Q + K AK IPV++
Sbjct: 101 SALVLTASKKSLDPVAPLQKYCVVSVSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMI 160
Query: 574 LGVLLGRKSYPLKKYLFVFLI 636
G ++ RK Y K Y F ++
Sbjct: 161 WGTIIMRKKYGGKDYFFAVVV 181
>06_03_0629 +
22920206-22920291,22920430-22920527,22920657-22920796,
22921596-22921626,22922025-22922128,22922439-22922560,
22922651-22923050,22923245-22923268
Length = 334
Score = 57.6 bits (133), Expect = 8e-09
Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Frame = +1
Query: 253 FYAGSIFTCYFIYGMLQEKVTRGVYGNN-EKFTATLSLVLVQCTVNYIFAQILMLSWKHE 429
F I++ Y G+LQE ++ +G +F L Q V ++++ I++ W
Sbjct: 10 FCVAGIWSAYITQGVLQETLSTKRFGPEARRFDHLAFLNFAQNVVCFVWSFIMIKLWSSG 69
Query: 430 KDNTKKIY----YFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLMLGVLLGRK 597
++ Y+ ++T +G AL++++YP QV+ K++K IPV+++G +L
Sbjct: 70 GSSSAGRAPLRKYWGVSITNTVGPAMGIEALKFISYPAQVLAKSSKMIPVMLMGTILYGV 129
Query: 598 SYPLKKYLFVFLI 636
Y +Y+ FL+
Sbjct: 130 KYTFPEYICTFLV 142
>03_01_0124 +
971213-971341,971741-971769,971877-972078,972839-973081,
973172-973273,973743-974180
Length = 380
Score = 37.5 bits (83), Expect = 0.009
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +1
Query: 505 ALQWVNYPTQVVGKAAKPIPVLMLGVLLG--RKSYPLKKYLFVFLI 636
+L ++NYP Q++ K+ K +PV+++G + R+ YP +Y+ ++
Sbjct: 104 SLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPFHEYISAVML 149
>12_01_0661 + 5596739-5597047,5597125-5597703
Length = 295
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 421 SKITLKFEQRCNSLYIVRELMIRWP*ISHYYHI 323
S++ LKF+QR + LY R+L +W + + Y I
Sbjct: 39 SQVALKFQQRTHLLYTKRQLKNKWDKLRNEYTI 71
>08_01_0344 +
3043824-3044123,3044260-3044314,3044810-3044985,
3045083-3045283,3045383-3045642,3045909-3046222,
3046399-3046622,3047046-3047398,3047709-3047826,
3047875-3048133,3048252-3049729
Length = 1245
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 214 AKMAKSSTEFRFIFYAGSIFTCYFIYGMLQEKVTRGVYGNN 336
A + +R + ++ C+FI G++Q K +G YG++
Sbjct: 805 ATVVSMYVNWRMGLVSWAVMPCHFIGGLIQAKAAKGFYGDS 845
>12_02_0462 -
19373358-19373702,19373836-19373979,19374105-19374155,
19374352-19374525,19374864-19374903,19375938-19376026
Length = 280
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 567 PDARCPSWSQVISSEEIP 620
PD RCP + V SSE +P
Sbjct: 126 PDMRCPGFESVFSSEIVP 143
>07_01_0571 +
4232133-4232243,4232434-4232484,4232602-4232745,
4232979-4233320
Length = 215
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 567 PDARCPSWSQVISSEEIP 620
PD RCP + V SSE +P
Sbjct: 62 PDMRCPGFESVFSSEIVP 79
>03_02_0579 -
9606317-9606892,9607571-9607799,9607902-9608011,
9608898-9609275,9609380-9609658,9610044-9610168,
9610269-9610335,9610582-9612006
Length = 1062
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +1
Query: 382 VNYIFAQILMLSWKHEKDNT---KKIYYFSSALTYLLGMVCSNMALQWVNY 525
+ I AQI S E+D+T KK+ F ALT ++G++C+ + L V Y
Sbjct: 259 IGKIHAQIQEAS--QEEDDTPLKKKLNEFGEALTAIIGVICALVWLINVKY 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,932,798
Number of Sequences: 37544
Number of extensions: 309519
Number of successful extensions: 630
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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