Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24o08
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37712| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   1e-09
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 32   0.34 
SB_22463| Best HMM Match : VWA (HMM E-Value=0)                         29   4.2  
SB_7586| Best HMM Match : 7tm_1 (HMM E-Value=0.2)                      28   5.5  
SB_576| Best HMM Match : RVT_1 (HMM E-Value=0)                         28   5.5  
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   28   7.3  
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)                     28   7.3  
SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)                 28   7.3  

>SB_37712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 8/142 (5%)
 Frame = +1

Query: 235 TEFRFIFYAGSIFTCYFIYGMLQEKVTRGVY------GNNE--KFTATLSLVLVQCTVNY 390
           T  + +     +   Y ++G+LQE+V    Y      G  +  KF  +  LV V   +  
Sbjct: 133 TASKLLICVAGLQMSYIMWGILQERVMTQSYQEILPDGTTKEVKFKNSQFLVFVNRILAM 192

Query: 391 IFAQILMLSWKHEKDNTKKIYYFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVL 570
             A + ++  +  +       Y  S+ + ++   C   AL++V++PTQV+ KA+K IPV+
Sbjct: 193 GVAGVYIIVTRQPQHRAPLYKYSYSSFSNIMSSWCQYEALKFVSFPTQVLCKASKIIPVM 252

Query: 571 MLGVLLGRKSYPLKKYLFVFLI 636
           ++G L+ +KSYP  +Y    ++
Sbjct: 253 LMGKLVSKKSYPYYEYFIAVVL 274


>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 1841

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 509 CNGSTTLLRLWEKRQNPSQS*CSVSFLVASHIL*RNTCL 625
           C G + +  + ++R +PS S C +SF     I+ R TCL
Sbjct: 626 CKGESPIFAIIQRRDDPSISHCDISFGELHGIIFRGTCL 664


>SB_22463| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1865

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +3

Query: 525  PYSGC--GKSGKTHPSPDARCPSWSQ 596
            P  GC  G+S +  PS   RCPSW +
Sbjct: 1602 PREGCSTGRSPQASPSGRIRCPSWGE 1627


>SB_7586| Best HMM Match : 7tm_1 (HMM E-Value=0.2)
          Length = 362

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 361 LVLVQCTVNYIFAQILMLSWKHEKDNTKK 447
           L++++    +++  + M++WK  KD TKK
Sbjct: 132 LIIIRSAFAFLYIVLAMVTWKSLKDQTKK 160


>SB_576| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1444

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 400 QILMLSWKHEKDNTKKIYYFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAK 555
           Q+  L+W     N  + Y    AL   LG   S+  +QW   P+ +  K+ K
Sbjct: 126 QVDDLTWSESLQNASQAYAEQLALEDKLGNDGSSNVIQWPGLPSNIGEKSVK 177


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 312  YFFLKHSINKVTCKNRAGIKYESKFRAALSHFC 214
            ++ + + ++KVTCKN   +  + K+   L+H C
Sbjct: 946  FWQVHYYLSKVTCKNTVSVVSDWKYVIVLAHAC 978


>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1230

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 327 IYSSSYFFLKHSINKVTCKNRAGIKYESKFRAALS--HFC*WYLRKFRTIPH 178
           +YS+ Y  L H+I +   +N     Y + +RA  S  +F  +     RT+PH
Sbjct: 87  LYSNIYRALHHNIYRALYRNIYRALYRNIYRALYSKIYFALYSKNLLRTVPH 138


>SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)
          Length = 427

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 155 GCLELISK*--GIVLNLRKYHQQKWLRAARNF 244
           GC E++ +    +V+N  K HQQ WL AA  F
Sbjct: 23  GCCEVVHQHCISLVVNRAKRHQQCWLSAAELF 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,172,097
Number of Sequences: 59808
Number of extensions: 375269
Number of successful extensions: 821
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)