Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24o08
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132904-16|CAC35849.1| 340|Caenorhabditis elegans Hypothetical... 121 4e-28
U00067-9|AAK20073.1| 364|Caenorhabditis elegans Hypothetical pr... 51 8e-07
U00067-10|ABD94100.1| 247|Caenorhabditis elegans Hypothetical p... 41 6e-04
AF036696-3|ABB51190.1| 292|Caenorhabditis elegans Hypothetical ... 38 0.008
AF036696-2|AAB88349.1| 324|Caenorhabditis elegans Hypothetical ... 38 0.008
Z93396-1|CAB07709.1| 875|Caenorhabditis elegans Hypothetical pr... 31 0.91
Z75549-7|CAD60423.1| 306|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z83123-8|CAB05613.2| 330|Caenorhabditis elegans Hypothetical pr... 27 8.5
U80439-2|AAB37639.1| 435|Caenorhabditis elegans Human cln (neur... 27 8.5
U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical p... 27 8.5
AL117195-27|CAE18006.1| 243|Caenorhabditis elegans Hypothetical... 27 8.5
AL021487-11|CAA16355.2| 330|Caenorhabditis elegans Hypothetical... 27 8.5
AF326786-1|AAK38267.1| 435|Caenorhabditis elegans CLN-3.2 protein. 27 8.5
>AL132904-16|CAC35849.1| 340|Caenorhabditis elegans Hypothetical
protein Y111B2A.20 protein.
Length = 340
Score = 121 bits (292), Expect = 4e-28
Identities = 62/134 (46%), Positives = 85/134 (63%), Gaps = 4/134 (2%)
Frame = +1
Query: 247 FIFYAGSIFTCYFIYGMLQEKVTRGVYG----NNEKFTATLSLVLVQCTVNYIFAQILML 414
F+ AG I CYF++G+ QE++ +G Y + EKFT T +LV CT N I+A ++
Sbjct: 24 FLICAGGILICYFVFGIQQERIVQGKYELPDESIEKFTFTQALVFFLCTANTIYA--FLI 81
Query: 415 SWKHEKDNTKKIYYFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLMLGVLLGR 594
K E DN Y +SA +YLL MV SN ALQ++ YPTQV+ K+ KPIPV++ GVL
Sbjct: 82 RKKTEIDNVPTKMYAASAASYLLAMVASNQALQYLPYPTQVLAKSCKPIPVMIFGVLFAH 141
Query: 595 KSYPLKKYLFVFLI 636
KSY +KY +V +I
Sbjct: 142 KSYHWRKYCYVLMI 155
>U00067-9|AAK20073.1| 364|Caenorhabditis elegans Hypothetical
protein F54E7.1a protein.
Length = 364
Score = 50.8 bits (116), Expect = 8e-07
Identities = 38/128 (29%), Positives = 59/128 (46%)
Frame = +1
Query: 220 MAKSSTEFRFIFYAGSIFTCYFIYGMLQEKVTRGVYGNNEKFTATLSLVLVQCTVNYIFA 399
+A+ +F+ + +IF Y YG +QE + + +T TL L+ Y
Sbjct: 33 IARKPKWLQFVLLSLAIFILYIGYGYMQELIFKLPGMKPFGWTLTLIQFLIYSGCGYTEC 92
Query: 400 QILMLSWKHEKDNTKKIYYFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLMLG 579
I W + K Y A + M SN ++ ++NYPTQV+ K K IPVL+ G
Sbjct: 93 II----WHNTKRMIPWRIYGVIAFFTVATMGLSNASVGYLNYPTQVIFKCCKLIPVLIGG 148
Query: 580 VLLGRKSY 603
+L+ K Y
Sbjct: 149 ILIQGKRY 156
>U00067-10|ABD94100.1| 247|Caenorhabditis elegans Hypothetical
protein F54E7.1b protein.
Length = 247
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +1
Query: 487 MVCSNMALQWVNYPTQVVGKAAKPIPVLMLGVLLGRKSY 603
M SN ++ ++NYPTQV+ K K IPVL+ G+L+ K Y
Sbjct: 1 MGLSNASVGYLNYPTQVIFKCCKLIPVLIGGILIQGKRY 39
>AF036696-3|ABB51190.1| 292|Caenorhabditis elegans Hypothetical
protein F15B10.1b protein.
Length = 292
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 454 YFSSALTYLLGMVCSNMALQW-VNYPTQVVGKAAKPIPVLMLGVLLGRKSYPLKKYLFVF 630
YF + + + V +N AL + V P ++ ++ + L+L V++ KSY +KY+ VF
Sbjct: 35 YFKTVTMFFIVNVVNNQALNFHVPVPLHIIFRSGSLLATLILSVVMVGKSYSARKYISVF 94
Query: 631 LI 636
I
Sbjct: 95 AI 96
>AF036696-2|AAB88349.1| 324|Caenorhabditis elegans Hypothetical
protein F15B10.1a protein.
Length = 324
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 454 YFSSALTYLLGMVCSNMALQW-VNYPTQVVGKAAKPIPVLMLGVLLGRKSYPLKKYLFVF 630
YF + + + V +N AL + V P ++ ++ + L+L V++ KSY +KY+ VF
Sbjct: 67 YFKTVTMFFIVNVVNNQALNFHVPVPLHIIFRSGSLLATLILSVVMVGKSYSARKYISVF 126
Query: 631 LI 636
I
Sbjct: 127 AI 128
>Z93396-1|CAB07709.1| 875|Caenorhabditis elegans Hypothetical
protein ZC15.1 protein.
Length = 875
Score = 30.7 bits (66), Expect = 0.91
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2
Query: 636 NKKYKQVFLQRI*LATKKDTEHQDWDGFCRFSHNLSRVVDPLQRHVRADHT 484
N Q+F+ L ++ +E DW+ F R +HNL + L R++RA T
Sbjct: 775 NASGHQMFIPTFSLFVRRRSEVLDWESFGRRNHNLPK----LPRNIRASKT 821
>Z75549-7|CAD60423.1| 306|Caenorhabditis elegans Hypothetical
protein T19C4.8 protein.
Length = 306
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 247 FIFYAGSIFTCYFIYGMLQEKVTRGVYGNNEKFTATLSLVLVQCTV 384
F+ Y ++ YF Y + +K + N + TLS +V CTV
Sbjct: 142 FVTYHIFLYDTYFQYNAVADKFSLASKYNIKDIFTTLSCFMVSCTV 187
>Z83123-8|CAB05613.2| 330|Caenorhabditis elegans Hypothetical
protein T04A11.10 protein.
Length = 330
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 247 FIFYAGSIFTCYFIYGMLQEKVTRGVYGNNEKFTATLSLVLV 372
FI + I TCY I ++Q + +G+ N+E ++ LV++
Sbjct: 32 FIPFIYMIPTCYAILRIIQVYIQKGLRRNDETINRSVFLVII 73
>U80439-2|AAB37639.1| 435|Caenorhabditis elegans Human cln
(neuronal ceroid lipofuscinosis)related protein 3.2
protein.
Length = 435
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +1
Query: 355 LSLVLVQCTVNYIFAQILMLSWKHEKDNTKKIYYFSSALTYLLGMVCSNMALQWVNYPTQ 534
+S+ L + +N ++L H + + Y +TY LG+ S + +V PTQ
Sbjct: 280 ISVYLAEYYINQGLLELLEFDCSHGFSMSSESQYRWFQVTYQLGVFISRSSSNYVTIPTQ 339
Query: 535 VVGKAA 552
+ A
Sbjct: 340 YLKSLA 345
>U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical
protein R05F9.12 protein.
Length = 955
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 614 FFRGYDLRPRRTPSIRT 564
F RGY + PR+TPSI T
Sbjct: 772 FVRGYSVIPRQTPSITT 788
>AL117195-27|CAE18006.1| 243|Caenorhabditis elegans Hypothetical
protein Y57A10A.35 protein.
Length = 243
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 343 FTATLSLVLVQCTVNYIFAQI 405
FT+ +SL+LV TV+YIF+ +
Sbjct: 185 FTSNISLLLVTSTVSYIFSPL 205
>AL021487-11|CAA16355.2| 330|Caenorhabditis elegans Hypothetical
protein Y45F10B.4 protein.
Length = 330
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 247 FIFYAGSIFTCYFIYGMLQEKVTRGVYGNNEKFTATLSLVLV 372
FI + I TCY I ++Q + +G+ N+E ++ LV++
Sbjct: 32 FIPFIYMIPTCYAILRIIQVYIQKGLRKNDETINQSVFLVII 73
>AF326786-1|AAK38267.1| 435|Caenorhabditis elegans CLN-3.2 protein.
Length = 435
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +1
Query: 355 LSLVLVQCTVNYIFAQILMLSWKHEKDNTKKIYYFSSALTYLLGMVCSNMALQWVNYPTQ 534
+S+ L + +N ++L H + + Y +TY LG+ S + +V PTQ
Sbjct: 280 ISVYLAEYYINQGLLELLEFDCSHGFSMSSESQYRWFQVTYQLGVFISRSSSNYVTIPTQ 339
Query: 535 VVGKAA 552
+ A
Sbjct: 340 YLKSLA 345
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,635,807
Number of Sequences: 27780
Number of extensions: 302112
Number of successful extensions: 767
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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