Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24o01
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 32 0.064
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c... 29 0.45
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 28 1.0
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 28 1.4
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 27 1.8
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 27 2.4
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 26 4.2
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 4.2
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 26 4.2
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 26 4.2
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 26 4.2
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 5.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.5
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 25 7.3
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 25 7.3
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc... 25 7.3
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 25 7.3
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 9.7
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy... 25 9.7
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 25 9.7
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 32.3 bits (70), Expect = 0.064
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Frame = +1
Query: 235 QWHLQALAAQRRDNVLRRAEELQKVAQYFEANTNKSRHHE-----QWTTEGYYERANKEA 399
Q + + +A QR+ +L EE K Q E + + + Q ER +EA
Sbjct: 558 QAYREKVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREA 617
Query: 400 ELLRQ---QKIRAAKLEE--RRQKLELMLFQENMQYQQELKNLSAQPKLYKNGSYLNKVP 564
E L + QK AK +E R+++ E L +E + QQEL+ + K + K
Sbjct: 618 ERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEK--QKQKEREKKL 675
Query: 565 TSMLQDINQGIIEKEEQLRKHE 630
Q+ ++ + +E++LR+ E
Sbjct: 676 KKQQQEADREKMAREQRLREEE 697
>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 29.5 bits (63), Expect = 0.45
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 253 LAAQRRDNVLRRAEELQKVAQYFEANTNKSRHHEQWTTEGYYERANKE-AELLRQQKIRA 429
+ A R D + + Q V QYFE + K+ W T+G+ A + E + ++ +R+
Sbjct: 35 ILAVRHDKQVFSEDYRQVVDQYFETSPKKNDIRLFWNTQGFVRLAIVQLEENVSEKSVRS 94
Query: 430 AKLE 441
A E
Sbjct: 95 AAAE 98
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/84 (21%), Positives = 40/84 (47%)
Frame = +1
Query: 400 ELLRQQKIRAAKLEERRQKLELMLFQENMQYQQELKNLSAQPKLYKNGSYLNKVPTSMLQ 579
E L++Q + + + L + Q++ +++ + + + + L K+ M
Sbjct: 347 EELKEQTNKLYEAYRTERLLSSGISQDHSVFREVNPSAKLEEERALHEEKLMKMEAEMKT 406
Query: 580 DINQGIIEKEEQLRKHEAELRLHH 651
+Q + EKE++L++ E ELR H
Sbjct: 407 IFSQKVQEKEDRLKQSENELRTRH 430
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -1
Query: 599 IIPWFMSCSIDVGTLLRYDPFLYNLGCAERFLSS---CWYCIFS 477
+IP ++C + G L Y P +NLG A F+++ CW S
Sbjct: 441 VIP--IACKLIFGKRLNYKPGPWNLGWASHFVNAYAVCWTAFVS 482
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 27.5 bits (58), Expect = 1.8
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 298 LQKVAQYFEANTNKS-RHHEQWTTEGYYERANKEAELLRQQKIRAAKLEERRQKLELML- 471
LQ V QY + K+ R H W E AEL KIR A+LE R KLE L
Sbjct: 24 LQGVIQYLQYEAFKNERDHNLWEIE--------RAEL----KIRVAQLERERAKLEQSLS 71
Query: 472 FQE 480
FQ+
Sbjct: 72 FQQ 74
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 27.1 bits (57), Expect = 2.4
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Frame = +1
Query: 262 QRRDNVLRRAEELQKVAQYFEAN---TNKSRHHEQWTTEGYYE------RANKEAELLRQ 414
+RR + A L+++ YFE N R + QW Y + R E
Sbjct: 163 ERRSGISPNANFLRQLRVYFECNYQLDRSLRPYRQWLFRRYGDFAVLNTRVPSEVAYAET 222
Query: 415 QKIRAAKLEERRQKLELMLFQENMQYQQELKN 510
+ RA +LE R +K +L + E K+
Sbjct: 223 VRARAGQLELRCKKCRFVLASSDYLVSHEPKD 254
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 26.2 bits (55), Expect = 4.2
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 349 HEQWTTEGYYERANKE 396
+ QWTT+ ++E ANK+
Sbjct: 708 YTQWTTQKFFEEANKQ 723
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = -1
Query: 515 ERFLSSCWYCIFSWNNISSSFWRLSSNFAALIFCCLNNSASLFARS 378
+ F++ C Y ++ ++++ ++SS + CL N S F +S
Sbjct: 692 QMFVACCGYVVYYFSSLHFGASQISSAIGSFAVGCLGNMYSHFIKS 737
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 409 RQQKIRAAKLEERRQKLELMLFQENMQYQQELKNLSAQPKLYK 537
R Q+++ AKL E+R+ L L + N + ++L+ S K YK
Sbjct: 16 RNQELQEAKLNEKRRALRKAL-EGNKELNKDLQEDSQLQKDYK 57
>SPBC577.05c |rec27|mug41|meiotic recombination protein
Rec27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +1
Query: 391 KEAELLRQQKIRAAKLEERRQKLELMLFQENMQYQQELKNLSAQP 525
++A ++Q +E R+Q+LE+ + + +QY ++L+ + P
Sbjct: 81 QKANQIKQLNEEKLSIEARKQQLEIEIRNQLLQYAEKLRIVVKTP 125
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 100 NFNDTYDLTYSNYGSLSSPTLCNNRLCDHCIK 195
NF + +++ LSS + NN LCD+C K
Sbjct: 286 NFGSNDNHSHNKKRRLSSLSTNNNHLCDNCHK 317
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 122 RSYVSLKLLPHNKLSHCPQSRNFKVSN 42
R+ +S P +KLS P+SRN +SN
Sbjct: 821 RNSISSTKSPQHKLSDQPRSRNNSISN 847
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 5.5
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 322 EANTNKSRHHEQWTTEGYYERANKEAELLRQ-QKIRAAKLEERRQKLE-LMLFQENMQYQ 495
E +NKS EQ E +NK LRQ + A+ + ++KLE + +E+ +
Sbjct: 241 EQASNKSLRGEQERLEKLLVSSNKTVSTLRQTENSLRAECKTLQEKLEKCAINEEDSKLL 300
Query: 496 QELKN 510
+ELK+
Sbjct: 301 EELKH 305
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 403 LLRQQKIRAAKLEERRQKLELMLFQENMQYQQELKNLSAQPK 528
+L +++ +KL ERR+ L + L Q+N QY + S + K
Sbjct: 100 ILFEREEEISKLMERRE-LAIRLHQQNAQYMAQSTRRSTRDK 140
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 187 NDRINGYCIVWATTTNRNWS 128
NDRI G CI A + NW+
Sbjct: 419 NDRIGGKCIRLAFNQDENWT 438
>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
Sen34|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +1
Query: 298 LQKVAQYFEANTNKSRHHEQWTTEGYYERANKEAELLRQQKIRAAKLEERRQKLELM 468
++K Y +T + + TT+ ++ K+ + L ++ AAK +E +K+E+M
Sbjct: 65 IEKGISYIVDDTKVHKQLLENTTKDDVKQCLKKRQSLAYDQMIAAKKKENEKKIEIM 121
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/61 (19%), Positives = 32/61 (52%)
Frame = +1
Query: 208 ENKMSRSKPQWHLQALAAQRRDNVLRRAEELQKVAQYFEANTNKSRHHEQWTTEGYYERA 387
++++S+ + + + + +++ AEE K+AQ + N S H+++ + Y ++
Sbjct: 91 KDRISKKDKKKSKKGKSKTKEESIEINAEEGAKIAQPAIGSANASNHNDEEAYDRYIKKH 150
Query: 388 N 390
N
Sbjct: 151 N 151
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 25.4 bits (53), Expect = 7.3
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +1
Query: 289 AEELQKVAQYFEANTNKSRHHEQWTTEGYYERANKEAELLRQQKIRAAKLEERRQKLELM 468
A++L+ ++ E + +H YE + L Q +R + LEE + EL+
Sbjct: 667 AQKLEAISTLVEKEFHSVVYHFIGIQRSLYENYAQGFLFLIPQDMRDSILEETQDYAELV 726
Query: 469 LFQENMQYQQEL 504
E M Y E+
Sbjct: 727 RAFEPMHYDDEV 738
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/66 (22%), Positives = 30/66 (45%)
Frame = +1
Query: 298 LQKVAQYFEANTNKSRHHEQWTTEGYYERANKEAELLRQQKIRAAKLEERRQKLELMLFQ 477
L++ Y++ NT + +Q + ++ E + K+R+ E+ + L L
Sbjct: 666 LEEATSYYQKNTELQQLLKQNESASELLKSRNEKLCVDYDKLRSVFEEDSSKILSLQKEN 725
Query: 478 ENMQYQ 495
EN+Q Q
Sbjct: 726 ENLQSQ 731
>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 280 LRRAEELQKVAQYFEANTNKSRHHEQWTTE 369
+R AEE KVA+ + +N N+S H +W E
Sbjct: 137 VREAEEYAKVAEIYHSN-NQSNPH-RWVYE 164
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 424 RAAKLEERRQKLELMLFQENMQYQQELKNLSAQPKLYK 537
+ AK ++R ++LEL ++Q ++ELK KL++
Sbjct: 176 KKAKRKDREKQLELTRRLSHLQKRRELKAAGINIKLFR 213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,875
Number of Sequences: 5004
Number of extensions: 52200
Number of successful extensions: 184
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -