Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24o01
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      27   0.16 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   2.0  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   4.5  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 121 LTYSNYGSLSSPTLCNNRLCDHCIKRG*TENKMSRSKPQWHLQAL 255
           L++  +G+L  P +C    CD C K   T+  + R K Q H Q L
Sbjct: 357 LSHPLHGNLLPPGVCYT--CDVCGKTLSTKLTLKRHKEQQHFQPL 399


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 9/120 (7%)
 Frame = +1

Query: 262 QRRDNVLRRAEELQKVAQYFEANTNKSRHHEQWTTEGYYERANKEAELLRQ-----QKIR 426
           +RR +  R  E  +K  QY + +  K +  E+ T+   Y R+ +  +   +     +K R
Sbjct: 234 ERRCSRDRNREYRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQRSYKNENSYRKYR 293

Query: 427 AAKLEERRQKLELMLFQE----NMQYQQELKNLSAQPKLYKNGSYLNKVPTSMLQDINQG 594
               E  R ++E    +E    +      + N +   KLY N   + ++P  +   I+ G
Sbjct: 294 ETSKERSRDRIERERSREPKIISSLSNNTIHNNNYNKKLYYNIINIEQIPVPVPVPIHCG 353


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 334 NKSRHHEQWT-TEGYYERANKEAELLRQQKIRAAKLEERRQKLELMLFQENMQYQQE 501
           +KS +H Q +  E   +   +  E  R+Q+  + ++  ++Q+ +    Q++ Q QQ+
Sbjct: 51  HKSIYHRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQQ 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,974
Number of Sequences: 438
Number of extensions: 3841
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)