Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24n24
(317 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 2.8
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 3.7
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 3.7
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 24 4.8
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom... 24 6.4
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 24 6.4
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 24 6.4
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 24 6.4
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 24 6.4
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 23 8.5
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.0 bits (52), Expect = 2.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 10 NLHLTFWKILVMFSLRTKCLRYLTNKTYFYSQIRK 114
N +LTFWK L ++ + RY ++ + QIR+
Sbjct: 975 NFYLTFWK-LSLYDVFVPLERYEFERSRAFDQIRQ 1008
Score = 23.8 bits (49), Expect = 6.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 105 NKEMRIWNQRFDSPRET 155
NKE + WNQ D +ET
Sbjct: 255 NKERKFWNQLPDREKET 271
>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 24.6 bits (51), Expect = 3.7
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +3
Query: 114 MRIWNQRFDSPRETRKFF 167
+ +WN++F +PR+T +F
Sbjct: 176 IEMWNRKFFNPRKTHVYF 193
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 3.7
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Frame = +1
Query: 61 KCLRYLTNKTYFYSQIRKCVFGIKDLIHQEKPENFSVCQVT-----SEDHEAAVDAIKRH 225
KC YL+N T+ S++R L+ ++ + + Q T +EDH + VD
Sbjct: 63 KCKSYLSNATFKGSKLRIEEARPYYLVKLQQEKKIADLQSTNNDEKNEDHSSKVDLEDPV 122
Query: 226 FLSEXVL--VISRNMNVNND 279
F E ++ S+NM V D
Sbjct: 123 FHGEIIVPGKHSKNMQVVTD 142
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 24.2 bits (50), Expect = 4.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 191 SSDVTWQTEKFSGFSW*IKSLIPNTHFL 108
SSD TW + FS ++ + SL P + L
Sbjct: 123 SSDPTWTVDLFSRYTEVVDSLAPYDNML 150
>SPAP11E10.01 |||ornithine cyclodeaminase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 330
Score = 23.8 bits (49), Expect = 6.4
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +3
Query: 108 KEMRIWNQRFDSPRE--TRKFFRLPS 179
+ +RIWN RF+S + +R LPS
Sbjct: 158 RSVRIWNHRFESAKSLASRASKELPS 183
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 23.8 bits (49), Expect = 6.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 74 YRKHFVLSENMTKIFQNVKCKFY 6
+RK +E+M FQN K +Y
Sbjct: 2148 FRKRLFAAEHMLVFFQNCKLDYY 2170
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 23.8 bits (49), Expect = 6.4
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 205 VDAIKRHFLSEXVLVISRNMN-VNND 279
+DAI+ H + LVI+ +M+ +NND
Sbjct: 610 MDAIRAHRKGKTTLVITHDMSQINND 635
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 23.8 bits (49), Expect = 6.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 52 LRTKCLRYLTNKTYFYSQIRK 114
+R LRY TN+ + Y Q+RK
Sbjct: 695 VRFPSLRYNTNRRFCYVQMRK 715
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 23.8 bits (49), Expect = 6.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 89 VLLVRYRKHFVLSENMTKIFQNVKCK 12
V L+ K FVLS+ M +I + KCK
Sbjct: 83 VYLITSFKSFVLSDVMDEISIDTKCK 108
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 153 FLLVNQIFDSKYAFPYL*VEICF 85
F +N FD Y FP V +CF
Sbjct: 271 FKALNASFDGSYKFPIPIVLLCF 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,271,019
Number of Sequences: 5004
Number of extensions: 23007
Number of successful extensions: 78
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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