Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24n24
(317 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 28 1.4
02_01_0763 - 5665010-5665202,5665285-5665375,5665460-5666245,566... 27 3.2
10_06_0083 + 10471648-10471806,10473261-10473343,10473384-104738... 26 5.6
08_02_1412 + 26893221-26893613,26894205-26894587,26894697-268948... 26 5.6
06_02_0087 - 11580046-11580261,11580495-11580620,11581530-115818... 26 5.6
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 26 5.6
10_08_0019 - 14167952-14171059 26 7.4
06_03_0691 + 23552437-23552914,23555168-23555953,23556045-235561... 26 7.4
06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-64... 25 9.7
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 124 GIKDLIHQEKPENFSVCQVTSEDHEAA 204
G+ ++ KP++ S C + S+ HEAA
Sbjct: 474 GLSNISIDNKPKSISACSLNSQKHEAA 500
>02_01_0763 -
5665010-5665202,5665285-5665375,5665460-5666245,
5667745-5668225
Length = 516
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 233 LKKCRLXASTAASWSSDVTWQTEKFSGFSW*IKSLIPN 120
L+ R + A SDV W+T + G S K L+PN
Sbjct: 454 LQAQRANSEAAYRGMSDVFWKTLQHEGISGFYKGLVPN 491
>10_06_0083 +
10471648-10471806,10473261-10473343,10473384-10473810,
10475806-10475932,10476329-10476471,10476687-10476749,
10476833-10476898,10477047-10477085
Length = 368
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 160 NFSVCQVTSEDHEAAVDAIKRHFLSEXVLVISRNMNV 270
+F++ + E VDA++RHF+S+ + N+ V
Sbjct: 331 HFNLDASPNPSREQLVDAVQRHFVSQAAKRLKTNVKV 367
>08_02_1412 +
26893221-26893613,26894205-26894587,26894697-26894814,
26894998-26895192,26895318-26895542,26895773-26895832,
26895956-26896036,26896142-26896547,26896730-26896965
Length = 698
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 104 CE*KYVLLVRYRKHFVLSENMTKI 33
C K +L +R+HFVL ENM ++
Sbjct: 119 CAVKANVLAFWRQHFVLEENMLEV 142
>06_02_0087 -
11580046-11580261,11580495-11580620,11581530-11581875,
11582433-11582572,11583273-11583677
Length = 410
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 10 NLHLTFWKILVMFSLRTKCLRYLTNKTYFYSQIRKCVFG--IKDLIHQEKPENFSVC 174
N H++ + ++ L T C+ YL N + I V G +KD+ PE ++C
Sbjct: 332 NFHMSLIQGVIRVFLNTVCMPYL-NSRLGHGVILPVVHGFTLKDIYVLTSPEKLTLC 387
>05_01_0168 +
1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 26.2 bits (55), Expect = 5.6
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +1
Query: 73 YLTNKTYFYSQIRKCVFGIKDLIHQEKPENFSVCQVT----SEDHEAAVDAIK 219
YL+N TYF S +R C +DLI + K + + T S D+E++V ++
Sbjct: 545 YLSNGTYFNSNLRNC----QDLIGELKEVKIRLQKFTHLALSVDNESSVKPLE 593
>10_08_0019 - 14167952-14171059
Length = 1035
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 178 VTSEDHEAAVDAIKRHFLSEXVLVI 252
+T E H VDA+K FL+ V V+
Sbjct: 285 MTGEPHPVEVDAVKSPFLASGVKVV 309
>06_03_0691 +
23552437-23552914,23555168-23555953,23556045-23556135,
23556214-23556406
Length = 515
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 233 LKKCRLXASTAASWSSDVTWQTEKFSGFSW*IKSLIPN 120
L+ R + +A SDV W+T + G S K ++PN
Sbjct: 453 LQAQRANSESAYRGMSDVFWRTLQHEGVSGFYKGILPN 490
>06_01_0081 +
646100-646346,646432-646848,647067-647170,648152-648352,
649088-649798,649944-650674,650942-651017,651096-651182,
651429-651517,651917-651973,652402-652510,652590-652649,
652835-652919,653178-653242,653694-653753,653869-653913,
654697-654800,654877-655099
Length = 1156
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 190 DHEAAVDAIKRHFLSEXVLVISRNMNVNNDR 282
D E A DAI ++ +E ++RN+ ++NDR
Sbjct: 665 DGECAHDAISGNYANEVDGQLNRNVPLSNDR 695
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,408,027
Number of Sequences: 37544
Number of extensions: 125798
Number of successful extensions: 244
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -