Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24n24
         (317 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY034483-1|AAK59705.1|  561|Homo sapiens hnRNP Q1 protein.             28   6.9  
AY034481-1|AAK59703.1|  623|Homo sapiens hnRNP Q3 protein.             28   6.9  
AF037448-1|AAC12926.1|  623|Homo sapiens Gry-rbp protein.              28   6.9  

>AY034483-1|AAK59705.1|  561|Homo sapiens hnRNP Q1 protein.
          Length = 561

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +1

Query: 85  KTYFYSQIRKCVFGIKDLI--HQ--EKPENFSVCQVTSEDHEAAVDAIKRHFLSEXVLV 249
           K     +  K   G+ D+I  HQ  +K +N S C +  EDH+ A  A +R  +S  V V
Sbjct: 256 KEQILEEFSKVTEGLTDVILYHQPDDKKKNRSFCFLEYEDHKTAAQA-RRRLMSGKVKV 313


>AY034481-1|AAK59703.1|  623|Homo sapiens hnRNP Q3 protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +1

Query: 85  KTYFYSQIRKCVFGIKDLI--HQ--EKPENFSVCQVTSEDHEAAVDAIKRHFLSEXVLV 249
           K     +  K   G+ D+I  HQ  +K +N S C +  EDH+ A  A +R  +S  V V
Sbjct: 256 KEQILEEFSKVTEGLTDVILYHQPDDKKKNRSFCFLEYEDHKTAAQA-RRRLMSGKVKV 313


>AF037448-1|AAC12926.1|  623|Homo sapiens Gry-rbp protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +1

Query: 85  KTYFYSQIRKCVFGIKDLI--HQ--EKPENFSVCQVTSEDHEAAVDAIKRHFLSEXVLV 249
           K     +  K   G+ D+I  HQ  +K +N S C +  EDH+ A  A +R  +S  V V
Sbjct: 256 KEQILEEFSKVTEGLTDVILYHQPDDKKKNRSFCFLEYEDHKTAAQA-RRRLMSGKVKV 313


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,073,121
Number of Sequences: 237096
Number of extensions: 703826
Number of successful extensions: 1286
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)