Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24n24
         (317 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66521-12|CAA91397.3|  614|Caenorhabditis elegans Hypothetical p...    29   0.73 
U39470-2|AAC71118.1|  862|Caenorhabditis elegans Temporarily ass...    29   0.96 
Z81455-3|CAB03808.2|  890|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AL032623-19|CAA21519.2|  890|Caenorhabditis elegans Hypothetical...    27   2.9  
U61953-5|AAC48080.2|  297|Caenorhabditis elegans Hypothetical pr...    26   5.1  
U23412-2|AAN65294.1|  678|Caenorhabditis elegans Glycyl trna syn...    26   5.1  
U23412-1|AAK21465.2|  742|Caenorhabditis elegans Glycyl trna syn...    26   5.1  
Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical pr...    26   6.8  
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli...    26   6.8  
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p...    25   8.9  
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p...    25   8.9  

>Z66521-12|CAA91397.3|  614|Caenorhabditis elegans Hypothetical
           protein W02B12.4 protein.
          Length = 614

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +1

Query: 163 FSVCQVTSEDHEAAVDAIKRHFLSEXVLVIS 255
           FS+  V  + ++A+ DA   HF+S+ ++V++
Sbjct: 141 FSILNVLGDGNDASCDAFAEHFVSKEMIVVT 171


>U39470-2|AAC71118.1|  862|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 127 protein.
          Length = 862

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 28  WKILVMFSLRTKCLRYLTNKTYFYSQIRKCVFGIKDL 138
           W+I+       K LRYL+N +++ + ++ C F +KD+
Sbjct: 137 WEIVTTEFRYIKLLRYLSNLSFYLTDLQNCGF-LKDI 172


>Z81455-3|CAB03808.2|  890|Caenorhabditis elegans Hypothetical
           protein B0399.2 protein.
          Length = 890

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +1

Query: 64  CLRYLTNKTYFYSQIRKCVFGIKDLIHQEKPENFSVCQVTSEDHEAAVDAIKRHFLSEXV 243
           CL+ L  +T FY     C   ++ L+  E+ ENF +CQ+     +     I  H  SE +
Sbjct: 791 CLKKL--QTRFYLGFAPC---LRPLLSTEEVENFEMCQMFEMYRDCIKLEIVEHCGSEMM 845

Query: 244 L 246
           L
Sbjct: 846 L 846


>AL032623-19|CAA21519.2|  890|Caenorhabditis elegans Hypothetical
           protein B0399.2 protein.
          Length = 890

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +1

Query: 64  CLRYLTNKTYFYSQIRKCVFGIKDLIHQEKPENFSVCQVTSEDHEAAVDAIKRHFLSEXV 243
           CL+ L  +T FY     C   ++ L+  E+ ENF +CQ+     +     I  H  SE +
Sbjct: 791 CLKKL--QTRFYLGFAPC---LRPLLSTEEVENFEMCQMFEMYRDCIKLEIVEHCGSEMM 845

Query: 244 L 246
           L
Sbjct: 846 L 846


>U61953-5|AAC48080.2|  297|Caenorhabditis elegans Hypothetical
           protein R08C7.4 protein.
          Length = 297

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 305 PIKYSSRARSLFTFIFLEITSTXSLKKCRLXASTAASWSSD 183
           P+KYSS A+ +   +FL+   T  +          + W  D
Sbjct: 200 PVKYSSDAQLMEDMLFLKYNKTTEISTLPKHGQKGSEWELD 240


>U23412-2|AAN65294.1|  678|Caenorhabditis elegans Glycyl trna
           synthetase protein1, isoform b protein.
          Length = 678

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 104 CE*KYVLLVRYRKHFVLSENMTKI 33
           C  K  +L  +RKHF+L E M ++
Sbjct: 101 CSLKANMLQEWRKHFILEEGMLEV 124


>U23412-1|AAK21465.2|  742|Caenorhabditis elegans Glycyl trna
           synthetase protein1, isoform a protein.
          Length = 742

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 104 CE*KYVLLVRYRKHFVLSENMTKI 33
           C  K  +L  +RKHF+L E M ++
Sbjct: 165 CSLKANMLQEWRKHFILEEGMLEV 188


>Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical
           protein B0240.3 protein.
          Length = 1093

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 121 FGIKDLIHQEKPENFSVCQVTSEDHEAAVDAIKRHFLSEXVLVISRNMNVNNDRAL 288
           FG+  L+ + K       Q+ +EDH   + + + H+    +  I +N    N+RAL
Sbjct: 557 FGVNRLLVKWKTSG----QIFTEDHTPVIKSEELHYFDPAMKKIWKNYADRNERAL 608


>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 8 protein.
          Length = 2329

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +1

Query: 121 FGIKDLIHQEKPENFSVCQVTSEDHEAAVDAIKRHFLSE 237
           + +K+ ++Q + E  ++ +   ++   A+  IKRH L++
Sbjct: 842 YSVKNRLNQSQREELALIEQAYDNPHEALSRIKRHMLTQ 880


>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
           protein F30A10.10 protein.
          Length = 1262

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 201 GS*RXQTALLERARAGDFKKYEREQRSCP*RIFNR 305
           G+ +  TA  E++R  D +KY  +Q++C   ++ R
Sbjct: 395 GTEKPTTAKTEKSRKKDKEKYPTDQKACYGLLYRR 429


>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
           protein F30A10.10 protein.
          Length = 1262

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 201 GS*RXQTALLERARAGDFKKYEREQRSCP*RIFNR 305
           G+ +  TA  E++R  D +KY  +Q++C   ++ R
Sbjct: 395 GTEKPTTAKTEKSRKKDKEKYPTDQKACYGLLYRR 429


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,943,808
Number of Sequences: 27780
Number of extensions: 126547
Number of successful extensions: 361
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)