Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24n17
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0395 + 21739350-21740165                                         30   1.6  
07_03_0382 + 17470508-17470807,17471449-17474517                       29   2.2  

>01_05_0395 + 21739350-21740165
          Length = 271

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 347 DKDVHSHVGREVVLNLDHDHNHRLDLALVNLADRTLATDPGLDHS 481
           D D +S  G  V +     H+H +D+  ++ + RT+A     DHS
Sbjct: 3   DLDANSGSGIAVAVAAASSHSHVIDMPQLDASSRTVAAASATDHS 47


>07_03_0382 + 17470508-17470807,17471449-17474517
          Length = 1122

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 100 LNWFLIEHAVYKLRKPNYNKMADSVNMSLDEIIKKNQQ 213
           L+WF I   +Y +R        +S+NM +D I++K  +
Sbjct: 102 LHWFTIPPNLYGMRYKTLKTSINSLNMKMDGILQKGSE 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,176,900
Number of Sequences: 37544
Number of extensions: 140138
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)