Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24n17
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.25 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.25 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.77 

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 484  RALTPKGRAGLEDLQTGMPPLTRSGRSFRGGAQ 582
            ++L  +GR+    L+T +PP++ +  +F GG Q
Sbjct: 1836 KSLPRRGRSSRSSLRTLLPPISVAETTFVGGNQ 1868


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 484  RALTPKGRAGLEDLQTGMPPLTRSGRSFRGGAQ 582
            ++L  +GR+    L+T +PP++ +  +F GG Q
Sbjct: 1832 KSLPRRGRSSRSSLRTLLPPISVAETTFVGGNQ 1864


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -1

Query: 196 LSHLVTY*QNLPFCYNLVSVIYRQRVLLKTNLTDHVICNYINS 68
           ++HL+T+ +   + Y L      +++L   N+  H+I NY+ S
Sbjct: 761 VNHLLTHHE---YDYELSRGYIDEKILENQNIITHMILNYVGS 800



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 518  KIYKLECLL*QEVADLLEVELKKGCN 595
            K YK  C+   E A  L+  ++KG N
Sbjct: 1723 KPYKFHCMEKNEAAMKLKKRIEKGAN 1748


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,954
Number of Sequences: 438
Number of extensions: 1763
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)